miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 3' -59.6 NC_005887.1 + 27983 1.1 0.000253
Target:  5'- aGCGGCGACUCGAACAGGUGCCCGGCAc -3'
miRNA:   3'- -CGCCGCUGAGCUUGUCCACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26031 0.79 0.058032
Target:  5'- cGCGGCGAcCUCGAACAGG---CCGGCGu -3'
miRNA:   3'- -CGCCGCU-GAGCUUGUCCacgGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 25494 0.78 0.061454
Target:  5'- aGCGGCGGCUCGGACGaugGCgCGGCGg -3'
miRNA:   3'- -CGCCGCUGAGCUUGUccaCGgGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 14344 0.76 0.086443
Target:  5'- cGCGGCGAUcgUGaAGCAGcGUGCCgGGCAc -3'
miRNA:   3'- -CGCCGCUGa-GC-UUGUC-CACGGgCCGU- -5'
28024 3' -59.6 NC_005887.1 + 41496 0.75 0.099496
Target:  5'- aUGGCaccGGCUCGAACGgcaagucgacGGUGCUCGGCAa -3'
miRNA:   3'- cGCCG---CUGAGCUUGU----------CCACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 35340 0.72 0.177081
Target:  5'- cGCGGCGGCcggccaCGAGCuucacGCCCGGCAc -3'
miRNA:   3'- -CGCCGCUGa-----GCUUGucca-CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26095 0.72 0.181391
Target:  5'- cGCGGCGuuucaugGCgUCGAGCAGGaUGUCCuGCAc -3'
miRNA:   3'- -CGCCGC-------UG-AGCUUGUCC-ACGGGcCGU- -5'
28024 3' -59.6 NC_005887.1 + 26874 0.71 0.20222
Target:  5'- cGCGGCcaGCUCGAACGcgucuuGGUGCgCGGUc -3'
miRNA:   3'- -CGCCGc-UGAGCUUGU------CCACGgGCCGu -5'
28024 3' -59.6 NC_005887.1 + 18062 0.71 0.213115
Target:  5'- -gGGCGAUcgUGAACaAGGcgacGCCCGGCAa -3'
miRNA:   3'- cgCCGCUGa-GCUUG-UCCa---CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 14207 0.7 0.23642
Target:  5'- cGCGGC--CUCGGACAGGgcgGCgCCGcGCu -3'
miRNA:   3'- -CGCCGcuGAGCUUGUCCa--CG-GGC-CGu -5'
28024 3' -59.6 NC_005887.1 + 13086 0.7 0.242571
Target:  5'- cGCGGCG-CUCGAucGCGGaGUGCUgcagGGCGu -3'
miRNA:   3'- -CGCCGCuGAGCU--UGUC-CACGGg---CCGU- -5'
28024 3' -59.6 NC_005887.1 + 18093 0.69 0.268513
Target:  5'- cCGGCGACUCGccguGGcUGCugCCGGCAc -3'
miRNA:   3'- cGCCGCUGAGCuuguCC-ACG--GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 11190 0.69 0.271227
Target:  5'- aGUGGCgcGACaCGAugguGCAGGcguaugcgcacggccUGCCCGGCAa -3'
miRNA:   3'- -CGCCG--CUGaGCU----UGUCC---------------ACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 26676 0.69 0.275339
Target:  5'- cGCGGCGG--UGAGCuGGUcgaGCUCGGCGc -3'
miRNA:   3'- -CGCCGCUgaGCUUGuCCA---CGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 41597 0.69 0.275339
Target:  5'- aGCGGCGGCc----CAGGUGCggcggCCGGCGc -3'
miRNA:   3'- -CGCCGCUGagcuuGUCCACG-----GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 41925 0.69 0.282303
Target:  5'- uGCuGaGCGGCUCGcAGCuGaGcUGCCCGGCGu -3'
miRNA:   3'- -CG-C-CGCUGAGC-UUGuC-C-ACGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 33482 0.68 0.296648
Target:  5'- aCGGCGucgcgauCUCG-ACGGGcGCgCCGGCGu -3'
miRNA:   3'- cGCCGCu------GAGCuUGUCCaCG-GGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 30608 0.68 0.30403
Target:  5'- cGCGaGCaACUCGcGCAGcGcGUCCGGCAg -3'
miRNA:   3'- -CGC-CGcUGAGCuUGUC-CaCGGGCCGU- -5'
28024 3' -59.6 NC_005887.1 + 11605 0.68 0.30403
Target:  5'- uCGGCG-CUCGAcacGCAGGUGCagagCGuGCGc -3'
miRNA:   3'- cGCCGCuGAGCU---UGUCCACGg---GC-CGU- -5'
28024 3' -59.6 NC_005887.1 + 8685 0.68 0.311553
Target:  5'- --cGCGACggu-GCAGG-GCCCGGCGa -3'
miRNA:   3'- cgcCGCUGagcuUGUCCaCGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.