Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28024 | 3' | -59.6 | NC_005887.1 | + | 5014 | 0.67 | 0.376775 |
Target: 5'- uGCGGCGAC-CGAugcCA-GUGC-CGGCGc -3' miRNA: 3'- -CGCCGCUGaGCUu--GUcCACGgGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 5737 | 0.66 | 0.403496 |
Target: 5'- gGCGcGCGAUgcacUGAAacaaaAGGUGCgCGGCGu -3' miRNA: 3'- -CGC-CGCUGa---GCUUg----UCCACGgGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 8685 | 0.68 | 0.311553 |
Target: 5'- --cGCGACggu-GCAGG-GCCCGGCGa -3' miRNA: 3'- cgcCGCUGagcuUGUCCaCGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 9151 | 0.66 | 0.431386 |
Target: 5'- uGCGGCGcguucaUCuGGACGGGcucGUCCGGCc -3' miRNA: 3'- -CGCCGCug----AG-CUUGUCCa--CGGGCCGu -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 11190 | 0.69 | 0.271227 |
Target: 5'- aGUGGCgcGACaCGAugguGCAGGcguaugcgcacggccUGCCCGGCAa -3' miRNA: 3'- -CGCCG--CUGaGCU----UGUCC---------------ACGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 11605 | 0.68 | 0.30403 |
Target: 5'- uCGGCG-CUCGAcacGCAGGUGCagagCGuGCGc -3' miRNA: 3'- cGCCGCuGAGCU---UGUCCACGg---GC-CGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 11827 | 0.66 | 0.402586 |
Target: 5'- gGCGGCGGCcuguucUCGAGCAGcacgggcggaucGUuuucgacGCUCGGCGg -3' miRNA: 3'- -CGCCGCUG------AGCUUGUC------------CA-------CGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 11976 | 0.67 | 0.367281 |
Target: 5'- -aGGCGACgcCGAGC-GGUacaccgaGCUCGGCAu -3' miRNA: 3'- cgCCGCUGa-GCUUGuCCA-------CGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 12585 | 0.67 | 0.385549 |
Target: 5'- cGCGGCGAUccucgCGAuCAGcucGCCgGGCAa -3' miRNA: 3'- -CGCCGCUGa----GCUuGUCca-CGGgCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 13086 | 0.7 | 0.242571 |
Target: 5'- cGCGGCG-CUCGAucGCGGaGUGCUgcagGGCGu -3' miRNA: 3'- -CGCCGCuGAGCU--UGUC-CACGGg---CCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 13795 | 0.68 | 0.327808 |
Target: 5'- gGCGGCGACgccuacaaauuCAGcaGCCCGGCGc -3' miRNA: 3'- -CGCCGCUGagcuu------GUCcaCGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 14207 | 0.7 | 0.23642 |
Target: 5'- cGCGGC--CUCGGACAGGgcgGCgCCGcGCu -3' miRNA: 3'- -CGCCGcuGAGCUUGUCCa--CG-GGC-CGu -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 14344 | 0.76 | 0.086443 |
Target: 5'- cGCGGCGAUcgUGaAGCAGcGUGCCgGGCAc -3' miRNA: 3'- -CGCCGCUGa-GC-UUGUC-CACGGgCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 14704 | 0.67 | 0.351272 |
Target: 5'- cGCGGCGGg-CGGGCcGG-GCgCGGCGa -3' miRNA: 3'- -CGCCGCUgaGCUUGuCCaCGgGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 15242 | 0.68 | 0.32702 |
Target: 5'- aCGGCGGCcCGaAGCAGGcagccgcagugcUGCgCGGCGa -3' miRNA: 3'- cGCCGCUGaGC-UUGUCC------------ACGgGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 15467 | 0.66 | 0.425717 |
Target: 5'- uCGGC-AUUUGAGgAacgcugguuccagucGGUGCCCGGCGg -3' miRNA: 3'- cGCCGcUGAGCUUgU---------------CCACGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 18062 | 0.71 | 0.213115 |
Target: 5'- -gGGCGAUcgUGAACaAGGcgacGCCCGGCAa -3' miRNA: 3'- cgCCGCUGa-GCUUG-UCCa---CGGGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 18093 | 0.69 | 0.268513 |
Target: 5'- cCGGCGACUCGccguGGcUGCugCCGGCAc -3' miRNA: 3'- cGCCGCUGAGCuuguCC-ACG--GGCCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 21035 | 0.68 | 0.32702 |
Target: 5'- uGCGGuCGGCgCGGugGGcGUGCCCgugaaugugGGCGa -3' miRNA: 3'- -CGCC-GCUGaGCUugUC-CACGGG---------CCGU- -5' |
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28024 | 3' | -59.6 | NC_005887.1 | + | 23095 | 0.66 | 0.421963 |
Target: 5'- uCGGCGGCaccaagCGGuACAGGUGgagcaucgaaCCCGGUg -3' miRNA: 3'- cGCCGCUGa-----GCU-UGUCCAC----------GGGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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