miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28024 5' -56.3 NC_005887.1 + 3400 0.66 0.566062
Target:  5'- uUCGCCGCGcgCuACCgcugGCagGgCGGCu -3'
miRNA:   3'- uAGCGGCGCaaG-UGGa---CGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 4227 0.69 0.401148
Target:  5'- cAUCGCCGCGguugUUuuCCUGCUcgcgaUGgagcaCGGCa -3'
miRNA:   3'- -UAGCGGCGCa---AGu-GGACGA-----ACa----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 4620 0.66 0.533235
Target:  5'- cUCGCCGCGg-CGCCggugGCc-GcCGGCg -3'
miRNA:   3'- uAGCGGCGCaaGUGGa---CGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 4656 0.66 0.577126
Target:  5'- gAUCGCCcccgGCG-UCGCUUGCaUGcggggCGGCu -3'
miRNA:   3'- -UAGCGG----CGCaAGUGGACGaACa----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 8108 0.7 0.35615
Target:  5'- cUCGCCGCGcUCGCCgagGCgccgcUGuUCGGg -3'
miRNA:   3'- uAGCGGCGCaAGUGGa--CGa----AC-AGCCg -5'
28024 5' -56.3 NC_005887.1 + 8181 0.69 0.373717
Target:  5'- -aCGUCGuCGUUUACggGCcUGUCGGCu -3'
miRNA:   3'- uaGCGGC-GCAAGUGgaCGaACAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 8397 0.66 0.543018
Target:  5'- -aCGCCGCacgcgacGUgcUCGCCgaGCgccGUCGGCa -3'
miRNA:   3'- uaGCGGCG-------CA--AGUGGa-CGaa-CAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 9245 0.68 0.429827
Target:  5'- -gCGCCGCGUcggcgaucgcgUCuAUCUGUgcacggcgGUCGGCa -3'
miRNA:   3'- uaGCGGCGCA-----------AG-UGGACGaa------CAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 12060 0.67 0.501112
Target:  5'- -gCGCCGCG--CugCaGCagGUCGGCa -3'
miRNA:   3'- uaGCGGCGCaaGugGaCGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 14542 0.67 0.499
Target:  5'- --aGCCGCuaucuauucccUCGCCUGC--GUCGGCg -3'
miRNA:   3'- uagCGGCGca---------AGUGGACGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 16334 0.73 0.212888
Target:  5'- gGUCGCCGCGaacugcUUCAUCaGCUUGggaGGCu -3'
miRNA:   3'- -UAGCGGCGC------AAGUGGaCGAACag-CCG- -5'
28024 5' -56.3 NC_005887.1 + 18778 0.73 0.236935
Target:  5'- --aGUCGCGUUCGCaCUGCcgGcCGGCg -3'
miRNA:   3'- uagCGGCGCAAGUG-GACGaaCaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 19119 0.7 0.339171
Target:  5'- -cCGCCGcCGcUCGCgUGCc-GUCGGCg -3'
miRNA:   3'- uaGCGGC-GCaAGUGgACGaaCAGCCG- -5'
28024 5' -56.3 NC_005887.1 + 21228 0.67 0.490592
Target:  5'- uUCGUgGCGUUggcgagCACCgUGUUUG-CGGCg -3'
miRNA:   3'- uAGCGgCGCAA------GUGG-ACGAACaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 22991 0.66 0.544108
Target:  5'- cGUCGCCGCacgcgUCugCUGCgcgagcaugGUCaGCu -3'
miRNA:   3'- -UAGCGGCGca---AGugGACGaa-------CAGcCG- -5'
28024 5' -56.3 NC_005887.1 + 23748 0.71 0.299334
Target:  5'- uAUCGCUGCGcgUCACUuuccacagcgaUGCUUGUuccaUGGCa -3'
miRNA:   3'- -UAGCGGCGCa-AGUGG-----------ACGAACA----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 23780 0.66 0.577126
Target:  5'- -aCGCCGCGacgagcaugUCGCCcGCgaaGcCGGCg -3'
miRNA:   3'- uaGCGGCGCa--------AGUGGaCGaa-CaGCCG- -5'
28024 5' -56.3 NC_005887.1 + 24571 0.67 0.522439
Target:  5'- gAUCGCCGUcagcuucaCACCUGCgcaUGgguucgCGGCg -3'
miRNA:   3'- -UAGCGGCGcaa-----GUGGACGa--ACa-----GCCG- -5'
28024 5' -56.3 NC_005887.1 + 25115 0.67 0.522439
Target:  5'- -aCGCCGcCGUacgcgaUCGugucccacacgcCCUGCUUGcgCGGCg -3'
miRNA:   3'- uaGCGGC-GCA------AGU------------GGACGAACa-GCCG- -5'
28024 5' -56.3 NC_005887.1 + 25499 0.69 0.410572
Target:  5'- -gCGCCGCGguaCACCUcGCggaugaUGUCGcGCu -3'
miRNA:   3'- uaGCGGCGCaa-GUGGA-CGa-----ACAGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.