miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 27086 1.13 0.000107
Target:  5'- cGGACGCUCGCCGCGCAGCACUGCGGCu -3'
miRNA:   3'- -CCUGCGAGCGGCGCGUCGUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 36922 0.81 0.028419
Target:  5'- cGGGCGCgUgGUCGCGcCGGuCGCUGCGGCg -3'
miRNA:   3'- -CCUGCG-AgCGGCGC-GUC-GUGACGCCG- -5'
28025 3' -61 NC_005887.1 + 11549 0.81 0.02925
Target:  5'- ---aGCUCGgCGCGCAGCGC-GCGGCg -3'
miRNA:   3'- ccugCGAGCgGCGCGUCGUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 41976 0.79 0.045014
Target:  5'- cGGcGCGCUCGCCuaucaGCAGCACggccUGCGGCc -3'
miRNA:   3'- -CC-UGCGAGCGGcg---CGUCGUG----ACGCCG- -5'
28025 3' -61 NC_005887.1 + 41714 0.78 0.050464
Target:  5'- -uGCGCUCGCCGCGCGcuuuCAUcGCGGCu -3'
miRNA:   3'- ccUGCGAGCGGCGCGUc---GUGaCGCCG- -5'
28025 3' -61 NC_005887.1 + 27705 0.78 0.050464
Target:  5'- -uAC-CUCGCCGCGUAGCACUcGaCGGCg -3'
miRNA:   3'- ccUGcGAGCGGCGCGUCGUGA-C-GCCG- -5'
28025 3' -61 NC_005887.1 + 14997 0.78 0.054968
Target:  5'- cGACGCUCGuCUGCGCGcCGCUGCGcGUg -3'
miRNA:   3'- cCUGCGAGC-GGCGCGUcGUGACGC-CG- -5'
28025 3' -61 NC_005887.1 + 3599 0.77 0.056554
Target:  5'- gGGA-GCUCacguugcgccagGCCGCGCAGCGCUuCGGCc -3'
miRNA:   3'- -CCUgCGAG------------CGGCGCGUCGUGAcGCCG- -5'
28025 3' -61 NC_005887.1 + 27473 0.77 0.061583
Target:  5'- uGGCGCauUCuGCCGCGCGGUgcgcgcuguuGCUGCGGUg -3'
miRNA:   3'- cCUGCG--AG-CGGCGCGUCG----------UGACGCCG- -5'
28025 3' -61 NC_005887.1 + 13088 0.77 0.061583
Target:  5'- cGGCGCUCGaUCGCGgAGUGCUGCagGGCg -3'
miRNA:   3'- cCUGCGAGC-GGCGCgUCGUGACG--CCG- -5'
28025 3' -61 NC_005887.1 + 10985 0.77 0.063175
Target:  5'- uGGACGCUCGUCgaggaugGCGUGGUGCucgggUGCGGCg -3'
miRNA:   3'- -CCUGCGAGCGG-------CGCGUCGUG-----ACGCCG- -5'
28025 3' -61 NC_005887.1 + 1478 0.76 0.067044
Target:  5'- cGACGCcgaCGgCGUGCGGCGCUcgcGCGGCg -3'
miRNA:   3'- cCUGCGa--GCgGCGCGUCGUGA---CGCCG- -5'
28025 3' -61 NC_005887.1 + 4615 0.76 0.07094
Target:  5'- aGAUGCUCGCCGCG--GCGCcgGUGGCc -3'
miRNA:   3'- cCUGCGAGCGGCGCguCGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 34276 0.76 0.07297
Target:  5'- cGGcuuGCGCaugccgUCGCCGUGCGGCugACUGCGGg -3'
miRNA:   3'- -CC---UGCG------AGCGGCGCGUCG--UGACGCCg -5'
28025 3' -61 NC_005887.1 + 35205 0.76 0.07297
Target:  5'- gGGGCGaUUCGuuGCGCAGCAgcUUGuCGGCc -3'
miRNA:   3'- -CCUGC-GAGCggCGCGUCGU--GAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 15602 0.76 0.07297
Target:  5'- aGACGCagcgcacgggCGUCGCGCAGCAg-GCGGCc -3'
miRNA:   3'- cCUGCGa---------GCGGCGCGUCGUgaCGCCG- -5'
28025 3' -61 NC_005887.1 + 19334 0.76 0.073797
Target:  5'- aGGCGCUCGauaagcugaccaugcUCGCGCAGCagacGCgUGCGGCg -3'
miRNA:   3'- cCUGCGAGC---------------GGCGCGUCG----UG-ACGCCG- -5'
28025 3' -61 NC_005887.1 + 16468 0.76 0.075054
Target:  5'- -uGCGCUCGaCCGCGCGGCaggauccggcggGCUGguCGGCg -3'
miRNA:   3'- ccUGCGAGC-GGCGCGUCG------------UGAC--GCCG- -5'
28025 3' -61 NC_005887.1 + 39097 0.76 0.075054
Target:  5'- cGACGaa-GuuGCGCAGCGCgaGCGGCg -3'
miRNA:   3'- cCUGCgagCggCGCGUCGUGa-CGCCG- -5'
28025 3' -61 NC_005887.1 + 31042 0.76 0.075054
Target:  5'- cGGCGCUCGCUGCcgagcCGGcCGCUGCGaGCa -3'
miRNA:   3'- cCUGCGAGCGGCGc----GUC-GUGACGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.