miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28025 3' -61 NC_005887.1 + 8702 0.67 0.300686
Target:  5'- cGGCGaucCGCCGCGgcgguaAGCGCUucgucGCGGCc -3'
miRNA:   3'- cCUGCga-GCGGCGCg-----UCGUGA-----CGCCG- -5'
28025 3' -61 NC_005887.1 + 1673 0.67 0.300686
Target:  5'- -uGCGCgcgCGCCagGUGCAGgAUggUGCGGCc -3'
miRNA:   3'- ccUGCGa--GCGG--CGCGUCgUG--ACGCCG- -5'
28025 3' -61 NC_005887.1 + 18224 0.67 0.300686
Target:  5'- cGGCGCUucacaccgcaCGacaCGCGCAGCACgGCcaagGGCc -3'
miRNA:   3'- cCUGCGA----------GCg--GCGCGUCGUGaCG----CCG- -5'
28025 3' -61 NC_005887.1 + 5010 0.67 0.300686
Target:  5'- aGGAUGCggcgaccgaUGCCaGUGcCGGCGCUGCuGCg -3'
miRNA:   3'- -CCUGCGa--------GCGG-CGC-GUCGUGACGcCG- -5'
28025 3' -61 NC_005887.1 + 5600 0.67 0.300686
Target:  5'- uGGAa-CcUGCCGCGCGGCAU--CGGCa -3'
miRNA:   3'- -CCUgcGaGCGGCGCGUCGUGacGCCG- -5'
28025 3' -61 NC_005887.1 + 28960 0.67 0.300686
Target:  5'- cGACGUcCGCCGCGCcGGC-CUucagcGCGaGCg -3'
miRNA:   3'- cCUGCGaGCGGCGCG-UCGuGA-----CGC-CG- -5'
28025 3' -61 NC_005887.1 + 32444 0.67 0.300686
Target:  5'- cGGCGaUCagGuuGCGCAGcCACUgcGCGGCg -3'
miRNA:   3'- cCUGCgAG--CggCGCGUC-GUGA--CGCCG- -5'
28025 3' -61 NC_005887.1 + 29779 0.67 0.296316
Target:  5'- aGGAuCGCcgCGUCGCGCAGCucggGCcaguagcuggaagucUGCGGg -3'
miRNA:   3'- -CCU-GCGa-GCGGCGCGUCG----UG---------------ACGCCg -5'
28025 3' -61 NC_005887.1 + 18768 0.67 0.293431
Target:  5'- -aGCGCgucguaGUCGCGUucGCACUGcCGGCc -3'
miRNA:   3'- ccUGCGag----CGGCGCGu-CGUGAC-GCCG- -5'
28025 3' -61 NC_005887.1 + 41003 0.67 0.293431
Target:  5'- -aGCGCUCGa-GCGUcucGCcCUGCGGCu -3'
miRNA:   3'- ccUGCGAGCggCGCGu--CGuGACGCCG- -5'
28025 3' -61 NC_005887.1 + 28568 0.67 0.293431
Target:  5'- aGGCG-UCGCCGCccGCuGCGCggacGCGGUc -3'
miRNA:   3'- cCUGCgAGCGGCG--CGuCGUGa---CGCCG- -5'
28025 3' -61 NC_005887.1 + 2184 0.67 0.293431
Target:  5'- uGACGC-CgGCCGCggugaucggGCAGCGCaaaccgauggGCGGCu -3'
miRNA:   3'- cCUGCGaG-CGGCG---------CGUCGUGa---------CGCCG- -5'
28025 3' -61 NC_005887.1 + 15770 0.67 0.292713
Target:  5'- aGGcCGCg-GCCGCGaaGGCGCagaagcagaucgaUGCGGCa -3'
miRNA:   3'- -CCuGCGagCGGCGCg-UCGUG-------------ACGCCG- -5'
28025 3' -61 NC_005887.1 + 26228 0.68 0.286314
Target:  5'- gGGugGUugcgCGCgGCGCAGCGCcacCGGa -3'
miRNA:   3'- -CCugCGa---GCGgCGCGUCGUGac-GCCg -5'
28025 3' -61 NC_005887.1 + 18613 0.68 0.286314
Target:  5'- ---gGUUCGuuGCucgGCAGCGCgaucgGCGGCc -3'
miRNA:   3'- ccugCGAGCggCG---CGUCGUGa----CGCCG- -5'
28025 3' -61 NC_005887.1 + 13895 0.68 0.279333
Target:  5'- ---gGCUCGUgCGCGuCGGCAUUcGUGGCa -3'
miRNA:   3'- ccugCGAGCG-GCGC-GUCGUGA-CGCCG- -5'
28025 3' -61 NC_005887.1 + 1702 0.68 0.279333
Target:  5'- -aGCGCaaGCUGCGCGGCA-UGCaGCu -3'
miRNA:   3'- ccUGCGagCGGCGCGUCGUgACGcCG- -5'
28025 3' -61 NC_005887.1 + 23423 0.68 0.279333
Target:  5'- cGACgGC-CGCUGCGagauucggugAGCGCUGCGGg -3'
miRNA:   3'- cCUG-CGaGCGGCGCg---------UCGUGACGCCg -5'
28025 3' -61 NC_005887.1 + 38637 0.68 0.279333
Target:  5'- cGGAuCGCggUCGgCGCGCGGCucgaCGGCg -3'
miRNA:   3'- -CCU-GCG--AGCgGCGCGUCGugacGCCG- -5'
28025 3' -61 NC_005887.1 + 31715 0.68 0.272489
Target:  5'- cGGACGCgUGCgGCGUucuGC-CUGCuGCa -3'
miRNA:   3'- -CCUGCGaGCGgCGCGu--CGuGACGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.