Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28026 | 3' | -53.8 | NC_005887.1 | + | 39447 | 0.66 | 0.757184 |
Target: 5'- cGGCGUCGUUCGcGgcGGCCG-ACGUGUc -3' miRNA: 3'- -CUGCAGCAGGC-CaaCUGGCuUGUGCA- -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 40434 | 0.66 | 0.757184 |
Target: 5'- uGACGcCGcCCGGcUG-CCGAaagaACGCGUa -3' miRNA: 3'- -CUGCaGCaGGCCaACuGGCU----UGUGCA- -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 41213 | 0.66 | 0.736022 |
Target: 5'- cGCGUCGUCgUGcccgUGACCGAGCuCGa -3' miRNA: 3'- cUGCAGCAG-GCca--ACUGGCUUGuGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 18841 | 0.66 | 0.736022 |
Target: 5'- cGCGuUCGUCagcgcGGCCGAACACGUc -3' miRNA: 3'- cUGC-AGCAGgccaaCUGGCUUGUGCA- -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 32509 | 0.66 | 0.732808 |
Target: 5'- cGCGgCGUUCaGGUUGGCCGcgcugaccggcugcGACGCGUu -3' miRNA: 3'- cUGCaGCAGG-CCAACUGGC--------------UUGUGCA- -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 34986 | 0.66 | 0.725273 |
Target: 5'- cGGCGUUGUCguCGGUcugcagcgcGAUCGAAUACGUu -3' miRNA: 3'- -CUGCAGCAG--GCCAa--------CUGGCUUGUGCA- -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 11715 | 0.67 | 0.714428 |
Target: 5'- aGCGUCGcaucaacgaUCCGGaucuGCCGGACGCGc -3' miRNA: 3'- cUGCAGC---------AGGCCaac-UGGCUUGUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 33879 | 0.67 | 0.714428 |
Target: 5'- -gUGUCGUCgccgagCGGUUGcGCCGGGCGCu- -3' miRNA: 3'- cuGCAGCAG------GCCAAC-UGGCUUGUGca -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 7603 | 0.67 | 0.7035 |
Target: 5'- aGCGgCG-CCGGUUGAUCGAugGgCGg -3' miRNA: 3'- cUGCaGCaGGCCAACUGGCUugU-GCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 6477 | 0.67 | 0.692499 |
Target: 5'- gGGCGcggCGUCgCGGUgucuGCCGAGCGCa- -3' miRNA: 3'- -CUGCa--GCAG-GCCAac--UGGCUUGUGca -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 26838 | 0.67 | 0.692499 |
Target: 5'- cGCGaCGUCCGGaaacUGGCCGGcguccaucugacGCGCGg -3' miRNA: 3'- cUGCaGCAGGCCa---ACUGGCU------------UGUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 24765 | 0.67 | 0.691395 |
Target: 5'- cGACGUuguccagaucccaCGUCCGGUaguagauugugcUGGCCGAcaGCGg -3' miRNA: 3'- -CUGCA-------------GCAGGCCA------------ACUGGCUugUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 10420 | 0.67 | 0.670328 |
Target: 5'- aGGCGUUacgGUCgCGGUgcUGACCGAcgGCGCa- -3' miRNA: 3'- -CUGCAG---CAG-GCCA--ACUGGCU--UGUGca -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 17911 | 0.68 | 0.648009 |
Target: 5'- cGGCGgCGUCacaGGUUGGaCGGACGCGc -3' miRNA: 3'- -CUGCaGCAGg--CCAACUgGCUUGUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 14696 | 0.68 | 0.636821 |
Target: 5'- gGGC-UCGUCgCGGcgggcgGGCCGGGCGCGg -3' miRNA: 3'- -CUGcAGCAG-GCCaa----CUGGCUUGUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 37255 | 0.7 | 0.537101 |
Target: 5'- -uCGUCGUCCaGGUaGAUCGAcagcccGCACGg -3' miRNA: 3'- cuGCAGCAGG-CCAaCUGGCU------UGUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 15453 | 0.7 | 0.526293 |
Target: 5'- cGACGUCG-CCGcGaUGACCGcgcaccaaGACGCGUu -3' miRNA: 3'- -CUGCAGCaGGC-CaACUGGC--------UUGUGCA- -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 3723 | 0.71 | 0.443311 |
Target: 5'- cGAUGUUGUUCGcGUUGAacCCGAACugGc -3' miRNA: 3'- -CUGCAGCAGGC-CAACU--GGCUUGugCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 39309 | 0.73 | 0.368213 |
Target: 5'- -uCGUCGUUCGucaUUGGCCGAGCAUGg -3' miRNA: 3'- cuGCAGCAGGCc--AACUGGCUUGUGCa -5' |
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28026 | 3' | -53.8 | NC_005887.1 | + | 36291 | 0.86 | 0.054718 |
Target: 5'- cGAC-UCGUCCGGUUGGCCGAucuGCGCGg -3' miRNA: 3'- -CUGcAGCAGGCCAACUGGCU---UGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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