miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28027 3' -56.4 NC_005887.1 + 343 0.81 0.07124
Target:  5'- ----cCGCGGCGACaCUCGAcgugggccGCAGGCCg -3'
miRNA:   3'- gucaaGCGCCGCUG-GAGCU--------UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 892 0.7 0.388053
Target:  5'- gCAGauccucgCGCGGCGugC-CGAGCAGcGCa -3'
miRNA:   3'- -GUCaa-----GCGCCGCugGaGCUUGUC-CGg -5'
28027 3' -56.4 NC_005887.1 + 1086 0.67 0.548171
Target:  5'- gCAGgUCGaCGGCGccauuGCCgacgcCGAGCAGGUg -3'
miRNA:   3'- -GUCaAGC-GCCGC-----UGGa----GCUUGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 1591 0.78 0.103488
Target:  5'- gGGUggGUGGCGGCCUCGAACc-GCCa -3'
miRNA:   3'- gUCAagCGCCGCUGGAGCUUGucCGG- -5'
28027 3' -56.4 NC_005887.1 + 1592 0.75 0.169715
Target:  5'- gCGGcgCGCGGCGcgccaacggcgaucGCCUCGAcGCGGGCg -3'
miRNA:   3'- -GUCaaGCGCCGC--------------UGGAGCU-UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 2306 0.66 0.602796
Target:  5'- aCGGUaUCG-GGCGuaggccggccGCCUCGAGCcGcGCCa -3'
miRNA:   3'- -GUCA-AGCgCCGC----------UGGAGCUUGuC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 2350 0.66 0.591785
Target:  5'- -----gGCgGGCGACCagCGcucGCAGGCCg -3'
miRNA:   3'- gucaagCG-CCGCUGGa-GCu--UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 2874 0.69 0.406395
Target:  5'- gCGGUggauaacgCGCaGGCGACgaCGGACAcgucGGCCg -3'
miRNA:   3'- -GUCAa-------GCG-CCGCUGgaGCUUGU----CCGG- -5'
28027 3' -56.4 NC_005887.1 + 3729 0.69 0.406395
Target:  5'- -uGUUCGCGuuGaACC-CGAACuGGCCg -3'
miRNA:   3'- guCAAGCGCcgC-UGGaGCUUGuCCGG- -5'
28027 3' -56.4 NC_005887.1 + 3762 0.67 0.505615
Target:  5'- gCAGUUCGCGuCGuACuggCUCGAcgaGGGCCg -3'
miRNA:   3'- -GUCAAGCGCcGC-UG---GAGCUug-UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 5008 0.69 0.415769
Target:  5'- gCAGgaUGCGGCGACCgaugcCAGuGCCg -3'
miRNA:   3'- -GUCaaGCGCCGCUGGagcuuGUC-CGG- -5'
28027 3' -56.4 NC_005887.1 + 5809 0.66 0.591785
Target:  5'- cCAGacgGCGGCGAUCgagUCGGcGCGGGUCg -3'
miRNA:   3'- -GUCaagCGCCGCUGG---AGCU-UGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 6288 0.67 0.558994
Target:  5'- ---aUCGaCGGCGugCgCGAGCgcgucgAGGCCu -3'
miRNA:   3'- gucaAGC-GCCGCugGaGCUUG------UCCGG- -5'
28027 3' -56.4 NC_005887.1 + 9040 0.68 0.495193
Target:  5'- -cGUUUGuCGGCGGCC-CGuuCGcGGCCg -3'
miRNA:   3'- guCAAGC-GCCGCUGGaGCuuGU-CCGG- -5'
28027 3' -56.4 NC_005887.1 + 10734 0.69 0.415769
Target:  5'- -uGUUCGaUGGCGACauggaaUCGGACuGGCg -3'
miRNA:   3'- guCAAGC-GCCGCUGg-----AGCUUGuCCGg -5'
28027 3' -56.4 NC_005887.1 + 11393 0.67 0.520361
Target:  5'- cCGGagCGCuGGCGGCCggcgccgccaaggcaUCGucugagcgccAACAGGCCg -3'
miRNA:   3'- -GUCaaGCG-CCGCUGG---------------AGC----------UUGUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 11518 0.69 0.406395
Target:  5'- ----gCGCGGCaugcagaugGACgUCGAACuGGCCg -3'
miRNA:   3'- gucaaGCGCCG---------CUGgAGCUUGuCCGG- -5'
28027 3' -56.4 NC_005887.1 + 11559 0.68 0.48487
Target:  5'- gCAGcgCGCGGCGGUCgCGGAauCGGGCUu -3'
miRNA:   3'- -GUCaaGCGCCGCUGGaGCUU--GUCCGG- -5'
28027 3' -56.4 NC_005887.1 + 11807 0.69 0.403609
Target:  5'- uCGGUUCguacgcuaaggcagGCGGCGGCCuguucUCGAgcagcACGGGCg -3'
miRNA:   3'- -GUCAAG--------------CGCCGCUGG-----AGCU-----UGUCCGg -5'
28027 3' -56.4 NC_005887.1 + 11857 0.67 0.537415
Target:  5'- gCAGuUUUGCGGUGcGCaaCGcACGGGCCg -3'
miRNA:   3'- -GUC-AAGCGCCGC-UGgaGCuUGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.