Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28028 | 3' | -54.7 | NC_005887.1 | + | 25320 | 1.08 | 0.000817 |
Target: 5'- gCUGCGCAUCCGAUCCGUUGCCAAGCAc -3' miRNA: 3'- -GACGCGUAGGCUAGGCAACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 23730 | 0.75 | 0.202054 |
Target: 5'- -cGgGCcgCCGAUCgCGcUGCCGAGCAa -3' miRNA: 3'- gaCgCGuaGGCUAG-GCaACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 26845 | 0.74 | 0.237893 |
Target: 5'- -gGCGCGUCUGccgguagCCGUUGCCGccgGGCAc -3' miRNA: 3'- gaCGCGUAGGCua-----GGCAACGGU---UCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 26942 | 0.72 | 0.309248 |
Target: 5'- aUGCGCGUCgaCGAUCCGcUGCCcgcGCGc -3' miRNA: 3'- gACGCGUAG--GCUAGGCaACGGuu-CGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 24900 | 0.71 | 0.350632 |
Target: 5'- uUGCGCGUCgGAUUCGg-GCCGuAGCGc -3' miRNA: 3'- gACGCGUAGgCUAGGCaaCGGU-UCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 35586 | 0.7 | 0.394863 |
Target: 5'- gUGCGUgcgguaaccuuccAUCCGAccgCCGUUGCCGuccGCAu -3' miRNA: 3'- gACGCG-------------UAGGCUa--GGCAACGGUu--CGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 30341 | 0.7 | 0.395802 |
Target: 5'- -cGCGCAgCCGGUuuucaaugccCCGaUGCCGAGCu -3' miRNA: 3'- gaCGCGUaGGCUA----------GGCaACGGUUCGu -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 35449 | 0.7 | 0.395802 |
Target: 5'- -cGCGUAgaugacgCCGAggcgUUCGUUGUCGAGCAg -3' miRNA: 3'- gaCGCGUa------GGCU----AGGCAACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 2229 | 0.69 | 0.454709 |
Target: 5'- -gGCGCAUCCGGUCggaaguCGUcGCgaCGAGCAu -3' miRNA: 3'- gaCGCGUAGGCUAG------GCAaCG--GUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 24246 | 0.69 | 0.464983 |
Target: 5'- -aGCGCGUCCGGUgucagguauUCGgcguccccauacUUGCCGGGCGu -3' miRNA: 3'- gaCGCGUAGGCUA---------GGC------------AACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 41390 | 0.69 | 0.475377 |
Target: 5'- gUGCGCGacguguucUCCGA--CGaUGCCGAGCAg -3' miRNA: 3'- gACGCGU--------AGGCUagGCaACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 815 | 0.69 | 0.475377 |
Target: 5'- gUGCGCG-CCGAgcgCCucgcggaucUUGCCGAGCAc -3' miRNA: 3'- gACGCGUaGGCUa--GGc--------AACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 31517 | 0.68 | 0.528952 |
Target: 5'- uUGCGUAUCCaGAaUCGggaagaaGCCGAGCAg -3' miRNA: 3'- gACGCGUAGG-CUaGGCaa-----CGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 38252 | 0.68 | 0.538842 |
Target: 5'- cCUGCGCGaacucgaugCCGAUCUGcgccugcUUGCCcguGAGCAg -3' miRNA: 3'- -GACGCGUa--------GGCUAGGC-------AACGG---UUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 40935 | 0.68 | 0.551014 |
Target: 5'- gCU-CGCGUUCGucuugCCGcUGCCGAGCGg -3' miRNA: 3'- -GAcGCGUAGGCua---GGCaACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 36282 | 0.68 | 0.555461 |
Target: 5'- -cGCGCAUcuucguuggugagugCCGcgCCGcUGCCAccAGCAc -3' miRNA: 3'- gaCGCGUA---------------GGCuaGGCaACGGU--UCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 40929 | 0.67 | 0.562151 |
Target: 5'- -cGCGCA-CCGAgUUCGgcaacGCCGAGCGc -3' miRNA: 3'- gaCGCGUaGGCU-AGGCaa---CGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 34652 | 0.67 | 0.569983 |
Target: 5'- -gGCGCGccggcuugccgguuUCCgGAUCCGccacgUUGUCGAGCAg -3' miRNA: 3'- gaCGCGU--------------AGG-CUAGGC-----AACGGUUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 24475 | 0.67 | 0.573348 |
Target: 5'- -gGCGCggCCGAUCguguCGUcgaUGCCcGGCAg -3' miRNA: 3'- gaCGCGuaGGCUAG----GCA---ACGGuUCGU- -5' |
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28028 | 3' | -54.7 | NC_005887.1 | + | 35736 | 0.67 | 0.595887 |
Target: 5'- -gGCGuUGUCgGAUCCGgUGCCGccAGCGu -3' miRNA: 3'- gaCGC-GUAGgCUAGGCaACGGU--UCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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