Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28028 | 5' | -59 | NC_005887.1 | + | 25354 | 1.12 | 0.000201 |
Target: 5'- cUGCGCGUGGCGGAUCGGCACGUAGCCg -3' miRNA: 3'- -ACGCGCACCGCCUAGCCGUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 12890 | 0.78 | 0.066625 |
Target: 5'- gUGCGCGa-GCuGAUCGGCACGgcgAGCCa -3' miRNA: 3'- -ACGCGCacCGcCUAGCCGUGCa--UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 36890 | 0.78 | 0.074692 |
Target: 5'- cUGCGuCGUGGUGGAUgCGGCAgGaguGCCa -3' miRNA: 3'- -ACGC-GCACCGCCUA-GCCGUgCau-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 15017 | 0.77 | 0.07907 |
Target: 5'- cUGCGCGUGGCGcaGUCG--ACGUGGCCg -3' miRNA: 3'- -ACGCGCACCGCc-UAGCcgUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 11095 | 0.77 | 0.081349 |
Target: 5'- -cCGCGUGGCGcAUCGGCugGUgcgcgcgaagcuGGCCg -3' miRNA: 3'- acGCGCACCGCcUAGCCGugCA------------UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 7108 | 0.77 | 0.083692 |
Target: 5'- cGCGCGUggucuaacgaGGCGGggCGGCgcuGCGgcGCCg -3' miRNA: 3'- aCGCGCA----------CCGCCuaGCCG---UGCauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 18102 | 0.76 | 0.096399 |
Target: 5'- cGC-CGUGGCuGcugcCGGCACGUGGCCa -3' miRNA: 3'- aCGcGCACCGcCua--GCCGUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26394 | 0.75 | 0.110916 |
Target: 5'- cUGCGacaGcGGCGug-CGGCGCGUGGCCg -3' miRNA: 3'- -ACGCg--CaCCGCcuaGCCGUGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 38632 | 0.75 | 0.123978 |
Target: 5'- uUGCGCGgaucGCGG-UCGGCGCGcGGCUc -3' miRNA: 3'- -ACGCGCac--CGCCuAGCCGUGCaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 32782 | 0.74 | 0.146263 |
Target: 5'- gGCuCGUGcGCaGGAUCGGCGCGc-GCCg -3' miRNA: 3'- aCGcGCAC-CG-CCUAGCCGUGCauCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 11813 | 0.73 | 0.163092 |
Target: 5'- cUGCuGCGUGGCGucUCGGC-CGacGGCCg -3' miRNA: 3'- -ACG-CGCACCGCcuAGCCGuGCa-UCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 8570 | 0.73 | 0.163092 |
Target: 5'- cGCGCuUGGUGGAagccCGGCACGccgcGCCa -3' miRNA: 3'- aCGCGcACCGCCUa---GCCGUGCau--CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 9270 | 0.73 | 0.167563 |
Target: 5'- cUGUGCacGGCGG-UCGGCACGgcgacGCCg -3' miRNA: 3'- -ACGCGcaCCGCCuAGCCGUGCau---CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 22602 | 0.73 | 0.172144 |
Target: 5'- gUGUGCGUG-UGGAUCGcugcGCGCGUcGCCu -3' miRNA: 3'- -ACGCGCACcGCCUAGC----CGUGCAuCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 14531 | 0.71 | 0.218043 |
Target: 5'- gGCGCGgccgucGGCGGcgcgucgAUCGGCAUGUcGCg -3' miRNA: 3'- aCGCGCa-----CCGCC-------UAGCCGUGCAuCGg -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 26828 | 0.71 | 0.218614 |
Target: 5'- cUGCGCGUGcGCGagcgGGCGCGUcuGCCg -3' miRNA: 3'- -ACGCGCAC-CGCcuagCCGUGCAu-CGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 2687 | 0.71 | 0.218614 |
Target: 5'- gUGCGCGUgaagcguacgGGCGGcaagCGGC-CG-AGCCg -3' miRNA: 3'- -ACGCGCA----------CCGCCua--GCCGuGCaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 9782 | 0.71 | 0.223809 |
Target: 5'- aUGCGCGUcacgcacuGGCGcGAgaacgCGGUgaaagccuggcacACGUGGCCg -3' miRNA: 3'- -ACGCGCA--------CCGC-CUa----GCCG-------------UGCAUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 6960 | 0.71 | 0.2303 |
Target: 5'- gUGCGCG-GGCGcAUCGaGCAUG-AGCUg -3' miRNA: 3'- -ACGCGCaCCGCcUAGC-CGUGCaUCGG- -5' |
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28028 | 5' | -59 | NC_005887.1 | + | 17677 | 0.71 | 0.2303 |
Target: 5'- cGCGCuUGGCGacGUCGGCACGauguucgugacGGCCg -3' miRNA: 3'- aCGCGcACCGCc-UAGCCGUGCa----------UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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