miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 25354 1.12 0.000201
Target:  5'- cUGCGCGUGGCGGAUCGGCACGUAGCCg -3'
miRNA:   3'- -ACGCGCACCGCCUAGCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 12890 0.78 0.066625
Target:  5'- gUGCGCGa-GCuGAUCGGCACGgcgAGCCa -3'
miRNA:   3'- -ACGCGCacCGcCUAGCCGUGCa--UCGG- -5'
28028 5' -59 NC_005887.1 + 36890 0.78 0.074692
Target:  5'- cUGCGuCGUGGUGGAUgCGGCAgGaguGCCa -3'
miRNA:   3'- -ACGC-GCACCGCCUA-GCCGUgCau-CGG- -5'
28028 5' -59 NC_005887.1 + 15017 0.77 0.07907
Target:  5'- cUGCGCGUGGCGcaGUCG--ACGUGGCCg -3'
miRNA:   3'- -ACGCGCACCGCc-UAGCcgUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 11095 0.77 0.081349
Target:  5'- -cCGCGUGGCGcAUCGGCugGUgcgcgcgaagcuGGCCg -3'
miRNA:   3'- acGCGCACCGCcUAGCCGugCA------------UCGG- -5'
28028 5' -59 NC_005887.1 + 7108 0.77 0.083692
Target:  5'- cGCGCGUggucuaacgaGGCGGggCGGCgcuGCGgcGCCg -3'
miRNA:   3'- aCGCGCA----------CCGCCuaGCCG---UGCauCGG- -5'
28028 5' -59 NC_005887.1 + 18102 0.76 0.096399
Target:  5'- cGC-CGUGGCuGcugcCGGCACGUGGCCa -3'
miRNA:   3'- aCGcGCACCGcCua--GCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 26394 0.75 0.110916
Target:  5'- cUGCGacaGcGGCGug-CGGCGCGUGGCCg -3'
miRNA:   3'- -ACGCg--CaCCGCcuaGCCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 38632 0.75 0.123978
Target:  5'- uUGCGCGgaucGCGG-UCGGCGCGcGGCUc -3'
miRNA:   3'- -ACGCGCac--CGCCuAGCCGUGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 32782 0.74 0.146263
Target:  5'- gGCuCGUGcGCaGGAUCGGCGCGc-GCCg -3'
miRNA:   3'- aCGcGCAC-CG-CCUAGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 11813 0.73 0.163092
Target:  5'- cUGCuGCGUGGCGucUCGGC-CGacGGCCg -3'
miRNA:   3'- -ACG-CGCACCGCcuAGCCGuGCa-UCGG- -5'
28028 5' -59 NC_005887.1 + 8570 0.73 0.163092
Target:  5'- cGCGCuUGGUGGAagccCGGCACGccgcGCCa -3'
miRNA:   3'- aCGCGcACCGCCUa---GCCGUGCau--CGG- -5'
28028 5' -59 NC_005887.1 + 9270 0.73 0.167563
Target:  5'- cUGUGCacGGCGG-UCGGCACGgcgacGCCg -3'
miRNA:   3'- -ACGCGcaCCGCCuAGCCGUGCau---CGG- -5'
28028 5' -59 NC_005887.1 + 22602 0.73 0.172144
Target:  5'- gUGUGCGUG-UGGAUCGcugcGCGCGUcGCCu -3'
miRNA:   3'- -ACGCGCACcGCCUAGC----CGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 14531 0.71 0.218043
Target:  5'- gGCGCGgccgucGGCGGcgcgucgAUCGGCAUGUcGCg -3'
miRNA:   3'- aCGCGCa-----CCGCC-------UAGCCGUGCAuCGg -5'
28028 5' -59 NC_005887.1 + 26828 0.71 0.218614
Target:  5'- cUGCGCGUGcGCGagcgGGCGCGUcuGCCg -3'
miRNA:   3'- -ACGCGCAC-CGCcuagCCGUGCAu-CGG- -5'
28028 5' -59 NC_005887.1 + 2687 0.71 0.218614
Target:  5'- gUGCGCGUgaagcguacgGGCGGcaagCGGC-CG-AGCCg -3'
miRNA:   3'- -ACGCGCA----------CCGCCua--GCCGuGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 9782 0.71 0.223809
Target:  5'- aUGCGCGUcacgcacuGGCGcGAgaacgCGGUgaaagccuggcacACGUGGCCg -3'
miRNA:   3'- -ACGCGCA--------CCGC-CUa----GCCG-------------UGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 6960 0.71 0.2303
Target:  5'- gUGCGCG-GGCGcAUCGaGCAUG-AGCUg -3'
miRNA:   3'- -ACGCGCaCCGCcUAGC-CGUGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 17677 0.71 0.2303
Target:  5'- cGCGCuUGGCGacGUCGGCACGauguucgugacGGCCg -3'
miRNA:   3'- aCGCGcACCGCc-UAGCCGUGCa----------UCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.