miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28028 5' -59 NC_005887.1 + 293 0.67 0.404067
Target:  5'- -cUGCGUGGCGuGAUCaGCGa--GGCCg -3'
miRNA:   3'- acGCGCACCGC-CUAGcCGUgcaUCGG- -5'
28028 5' -59 NC_005887.1 + 1488 0.66 0.422615
Target:  5'- gGCGUGcGGCGcucGcgCGGCGCG--GCCg -3'
miRNA:   3'- aCGCGCaCCGC---CuaGCCGUGCauCGG- -5'
28028 5' -59 NC_005887.1 + 1988 0.67 0.413276
Target:  5'- cGCGCGacGGCGGcaCGGCcGCGcucgacGGCCa -3'
miRNA:   3'- aCGCGCa-CCGCCuaGCCG-UGCa-----UCGG- -5'
28028 5' -59 NC_005887.1 + 2598 0.7 0.267861
Target:  5'- -aCGCGgacaaGGCGGAcaaaaacauguacUC-GCACGUGGCCg -3'
miRNA:   3'- acGCGCa----CCGCCU-------------AGcCGUGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 2687 0.71 0.218614
Target:  5'- gUGCGCGUgaagcguacgGGCGGcaagCGGC-CG-AGCCg -3'
miRNA:   3'- -ACGCGCA----------CCGCCua--GCCGuGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 6814 0.66 0.461192
Target:  5'- cUGCGCGacUGGCGcuacgUGGCGCG-GGUCu -3'
miRNA:   3'- -ACGCGC--ACCGCcua--GCCGUGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 6960 0.71 0.2303
Target:  5'- gUGCGCG-GGCGcAUCGaGCAUG-AGCUg -3'
miRNA:   3'- -ACGCGCaCCGCcUAGC-CGUGCaUCGG- -5'
28028 5' -59 NC_005887.1 + 7014 0.66 0.441665
Target:  5'- aGCuCGUGGcCGGccgccgCGGCGCGcGGCa -3'
miRNA:   3'- aCGcGCACC-GCCua----GCCGUGCaUCGg -5'
28028 5' -59 NC_005887.1 + 7108 0.77 0.083692
Target:  5'- cGCGCGUggucuaacgaGGCGGggCGGCgcuGCGgcGCCg -3'
miRNA:   3'- aCGCGCA----------CCGCCuaGCCG---UGCauCGG- -5'
28028 5' -59 NC_005887.1 + 7442 0.66 0.45137
Target:  5'- gGCGC-UGGCGugcgcgucguGAUCGGCAU---GCCg -3'
miRNA:   3'- aCGCGcACCGC----------CUAGCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 7744 0.66 0.45137
Target:  5'- aGCGCGaaaaagGGCGagguGAUCGGCAaggauaacaAGCCg -3'
miRNA:   3'- aCGCGCa-----CCGC----CUAGCCGUgca------UCGG- -5'
28028 5' -59 NC_005887.1 + 8570 0.73 0.163092
Target:  5'- cGCGCuUGGUGGAagccCGGCACGccgcGCCa -3'
miRNA:   3'- aCGCGcACCGCCUa---GCCGUGCau--CGG- -5'
28028 5' -59 NC_005887.1 + 9270 0.73 0.167563
Target:  5'- cUGUGCacGGCGG-UCGGCACGgcgacGCCg -3'
miRNA:   3'- -ACGCGcaCCGCCuAGCCGUGCau---CGG- -5'
28028 5' -59 NC_005887.1 + 9782 0.71 0.223809
Target:  5'- aUGCGCGUcacgcacuGGCGcGAgaacgCGGUgaaagccuggcacACGUGGCCg -3'
miRNA:   3'- -ACGCGCA--------CCGC-CUa----GCCG-------------UGCAUCGG- -5'
28028 5' -59 NC_005887.1 + 10118 0.66 0.45137
Target:  5'- cGCgGCaggcaaagGUGGCGGGUuugaugacgagCGGCACcucUGGCCg -3'
miRNA:   3'- aCG-CG--------CACCGCCUA-----------GCCGUGc--AUCGG- -5'
28028 5' -59 NC_005887.1 + 11095 0.77 0.081349
Target:  5'- -cCGCGUGGCGcAUCGGCugGUgcgcgcgaagcuGGCCg -3'
miRNA:   3'- acGCGCACCGCcUAGCCGugCA------------UCGG- -5'
28028 5' -59 NC_005887.1 + 11397 0.68 0.335244
Target:  5'- aGCGC-UGGCGGc-CGGCGCc--GCCa -3'
miRNA:   3'- aCGCGcACCGCCuaGCCGUGcauCGG- -5'
28028 5' -59 NC_005887.1 + 11813 0.73 0.163092
Target:  5'- cUGCuGCGUGGCGucUCGGC-CGacGGCCg -3'
miRNA:   3'- -ACG-CGCACCGCcuAGCCGuGCa-UCGG- -5'
28028 5' -59 NC_005887.1 + 12064 0.68 0.343362
Target:  5'- cGCGC-UGcaGCaGGUCGGCACGUcGCUc -3'
miRNA:   3'- aCGCGcAC--CGcCUAGCCGUGCAuCGG- -5'
28028 5' -59 NC_005887.1 + 12148 0.66 0.441665
Target:  5'- cGCGCGccagauUGGUGacGAUCGcGUgACGUGGCUg -3'
miRNA:   3'- aCGCGC------ACCGC--CUAGC-CG-UGCAUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.