Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28029 | 3' | -57.1 | NC_005887.1 | + | 10025 | 0.66 | 0.569709 |
Target: 5'- --cGGCaucGGCGUGUgguccuacgcacugCGgCGCGCCGGc -3' miRNA: 3'- uaaCUGc--CCGCACAa-------------GCaGCGCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 14691 | 0.66 | 0.565377 |
Target: 5'- --cGAuCGGGC----UCGUCGCGgCGGg -3' miRNA: 3'- uaaCU-GCCCGcacaAGCAGCGCgGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 11874 | 0.66 | 0.554586 |
Target: 5'- --cGGCGGucuuuCGUcGUUCGgcaGCGCCGGc -3' miRNA: 3'- uaaCUGCCc----GCA-CAAGCag-CGCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 18570 | 0.66 | 0.543857 |
Target: 5'- ---cGCGGGCGacaUGcUCGUCGCGgCGu -3' miRNA: 3'- uaacUGCCCGC---ACaAGCAGCGCgGCc -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 18923 | 0.66 | 0.543857 |
Target: 5'- -aUGGCGGGCGgcugcgacgagcUGaUCGaCGCGCUGc -3' miRNA: 3'- uaACUGCCCGC------------ACaAGCaGCGCGGCc -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 26220 | 0.66 | 0.543857 |
Target: 5'- gGUUGGCGGG-GUG---GUUGCGCgCGGc -3' miRNA: 3'- -UAACUGCCCgCACaagCAGCGCG-GCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 7206 | 0.68 | 0.451133 |
Target: 5'- -gUGACGGcCGcccGUcCGUgGCGCCGGa -3' miRNA: 3'- uaACUGCCcGCa--CAaGCAgCGCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 36133 | 0.68 | 0.451133 |
Target: 5'- --cGGCGuGGCucgGUGaUCGUCuCGCCGGu -3' miRNA: 3'- uaaCUGC-CCG---CACaAGCAGcGCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 26504 | 0.68 | 0.451133 |
Target: 5'- ---cGCGGGCGUuucccUCGaUCGCGCCGc -3' miRNA: 3'- uaacUGCCCGCAca---AGC-AGCGCGGCc -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 15413 | 0.69 | 0.412767 |
Target: 5'- -cUGugGGGCcagcagugGUUCGUCGaCGgCGGc -3' miRNA: 3'- uaACugCCCGca------CAAGCAGC-GCgGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 25510 | 0.69 | 0.412767 |
Target: 5'- -aUGGCGcGGCGgGUggcggcauaaUCGUCGCcGCCGa -3' miRNA: 3'- uaACUGC-CCGCaCA----------AGCAGCG-CGGCc -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 12077 | 0.69 | 0.38535 |
Target: 5'- ---uGCGcGGCacGaUCGUCGCGCCGGa -3' miRNA: 3'- uaacUGC-CCGcaCaAGCAGCGCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 9792 | 0.7 | 0.338311 |
Target: 5'- -aUGACGGGCGaugagugggugauUGggcccgcgaacgCGUCGCaGCCGGu -3' miRNA: 3'- uaACUGCCCGC-------------ACaa----------GCAGCG-CGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 29516 | 0.7 | 0.326228 |
Target: 5'- --cGGCGGGCGcGUUguagaacagcaCGUCGCGCgCGa -3' miRNA: 3'- uaaCUGCCCGCaCAA-----------GCAGCGCG-GCc -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 34699 | 0.71 | 0.295587 |
Target: 5'- ---aGCGGGCGgccgUCGUCGCGCuugCGGu -3' miRNA: 3'- uaacUGCCCGCaca-AGCAGCGCG---GCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 7439 | 0.71 | 0.274109 |
Target: 5'- uUUGGCGcuGGCGUGcgCGUCGUGaUCGGc -3' miRNA: 3'- uAACUGC--CCGCACaaGCAGCGC-GGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 21664 | 0.75 | 0.157241 |
Target: 5'- -cUGACGGGCGUG-UCGcUGaCGUCGGg -3' miRNA: 3'- uaACUGCCCGCACaAGCaGC-GCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 36920 | 0.76 | 0.136998 |
Target: 5'- ---aGCGGGCGcGUg-GUCGCGCCGGu -3' miRNA: 3'- uaacUGCCCGCaCAagCAGCGCGGCC- -5' |
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28029 | 3' | -57.1 | NC_005887.1 | + | 24772 | 1.08 | 0.000641 |
Target: 5'- gAUUGACGGGCGUGUUCGUCGCGCCGGu -3' miRNA: 3'- -UAACUGCCCGCACAAGCAGCGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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