miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28029 3' -57.1 NC_005887.1 + 10025 0.66 0.569709
Target:  5'- --cGGCaucGGCGUGUgguccuacgcacugCGgCGCGCCGGc -3'
miRNA:   3'- uaaCUGc--CCGCACAa-------------GCaGCGCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 14691 0.66 0.565377
Target:  5'- --cGAuCGGGC----UCGUCGCGgCGGg -3'
miRNA:   3'- uaaCU-GCCCGcacaAGCAGCGCgGCC- -5'
28029 3' -57.1 NC_005887.1 + 11874 0.66 0.554586
Target:  5'- --cGGCGGucuuuCGUcGUUCGgcaGCGCCGGc -3'
miRNA:   3'- uaaCUGCCc----GCA-CAAGCag-CGCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 18570 0.66 0.543857
Target:  5'- ---cGCGGGCGacaUGcUCGUCGCGgCGu -3'
miRNA:   3'- uaacUGCCCGC---ACaAGCAGCGCgGCc -5'
28029 3' -57.1 NC_005887.1 + 18923 0.66 0.543857
Target:  5'- -aUGGCGGGCGgcugcgacgagcUGaUCGaCGCGCUGc -3'
miRNA:   3'- uaACUGCCCGC------------ACaAGCaGCGCGGCc -5'
28029 3' -57.1 NC_005887.1 + 26220 0.66 0.543857
Target:  5'- gGUUGGCGGG-GUG---GUUGCGCgCGGc -3'
miRNA:   3'- -UAACUGCCCgCACaagCAGCGCG-GCC- -5'
28029 3' -57.1 NC_005887.1 + 7206 0.68 0.451133
Target:  5'- -gUGACGGcCGcccGUcCGUgGCGCCGGa -3'
miRNA:   3'- uaACUGCCcGCa--CAaGCAgCGCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 36133 0.68 0.451133
Target:  5'- --cGGCGuGGCucgGUGaUCGUCuCGCCGGu -3'
miRNA:   3'- uaaCUGC-CCG---CACaAGCAGcGCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 26504 0.68 0.451133
Target:  5'- ---cGCGGGCGUuucccUCGaUCGCGCCGc -3'
miRNA:   3'- uaacUGCCCGCAca---AGC-AGCGCGGCc -5'
28029 3' -57.1 NC_005887.1 + 15413 0.69 0.412767
Target:  5'- -cUGugGGGCcagcagugGUUCGUCGaCGgCGGc -3'
miRNA:   3'- uaACugCCCGca------CAAGCAGC-GCgGCC- -5'
28029 3' -57.1 NC_005887.1 + 25510 0.69 0.412767
Target:  5'- -aUGGCGcGGCGgGUggcggcauaaUCGUCGCcGCCGa -3'
miRNA:   3'- uaACUGC-CCGCaCA----------AGCAGCG-CGGCc -5'
28029 3' -57.1 NC_005887.1 + 12077 0.69 0.38535
Target:  5'- ---uGCGcGGCacGaUCGUCGCGCCGGa -3'
miRNA:   3'- uaacUGC-CCGcaCaAGCAGCGCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 9792 0.7 0.338311
Target:  5'- -aUGACGGGCGaugagugggugauUGggcccgcgaacgCGUCGCaGCCGGu -3'
miRNA:   3'- uaACUGCCCGC-------------ACaa----------GCAGCG-CGGCC- -5'
28029 3' -57.1 NC_005887.1 + 29516 0.7 0.326228
Target:  5'- --cGGCGGGCGcGUUguagaacagcaCGUCGCGCgCGa -3'
miRNA:   3'- uaaCUGCCCGCaCAA-----------GCAGCGCG-GCc -5'
28029 3' -57.1 NC_005887.1 + 34699 0.71 0.295587
Target:  5'- ---aGCGGGCGgccgUCGUCGCGCuugCGGu -3'
miRNA:   3'- uaacUGCCCGCaca-AGCAGCGCG---GCC- -5'
28029 3' -57.1 NC_005887.1 + 7439 0.71 0.274109
Target:  5'- uUUGGCGcuGGCGUGcgCGUCGUGaUCGGc -3'
miRNA:   3'- uAACUGC--CCGCACaaGCAGCGC-GGCC- -5'
28029 3' -57.1 NC_005887.1 + 21664 0.75 0.157241
Target:  5'- -cUGACGGGCGUG-UCGcUGaCGUCGGg -3'
miRNA:   3'- uaACUGCCCGCACaAGCaGC-GCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 36920 0.76 0.136998
Target:  5'- ---aGCGGGCGcGUg-GUCGCGCCGGu -3'
miRNA:   3'- uaacUGCCCGCaCAagCAGCGCGGCC- -5'
28029 3' -57.1 NC_005887.1 + 24772 1.08 0.000641
Target:  5'- gAUUGACGGGCGUGUUCGUCGCGCCGGu -3'
miRNA:   3'- -UAACUGCCCGCACAAGCAGCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.