miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28029 5' -57.4 NC_005887.1 + 33204 0.66 0.50009
Target:  5'- gUCCAGaugaACGCGCCGcACUGGCacucgGUCGc -3'
miRNA:   3'- aAGGUCa---UGCGCGGC-UGGCUG-----CAGUa -5'
28029 5' -57.4 NC_005887.1 + 13192 0.66 0.50009
Target:  5'- gUCgAGcagGC-CGCCGGCCGACGUg-- -3'
miRNA:   3'- aAGgUCa--UGcGCGGCUGGCUGCAgua -5'
28029 5' -57.4 NC_005887.1 + 14025 0.66 0.489617
Target:  5'- -aCCGccgGCGCGCCG-CCGGCG-CAg -3'
miRNA:   3'- aaGGUca-UGCGCGGCuGGCUGCaGUa -5'
28029 5' -57.4 NC_005887.1 + 14600 0.66 0.479248
Target:  5'- -gUCGGUACGCGUaCGGCCGucggcgcCGUCGa -3'
miRNA:   3'- aaGGUCAUGCGCG-GCUGGCu------GCAGUa -5'
28029 5' -57.4 NC_005887.1 + 740 0.67 0.429125
Target:  5'- cUCaCGGgcCGCGCCGGCCGcCG-CAc -3'
miRNA:   3'- aAG-GUCauGCGCGGCUGGCuGCaGUa -5'
28029 5' -57.4 NC_005887.1 + 37559 0.67 0.429125
Target:  5'- aUCCgcgAGcACGgccuCGCCGGCUGGCGUCAg -3'
miRNA:   3'- aAGG---UCaUGC----GCGGCUGGCUGCAGUa -5'
28029 5' -57.4 NC_005887.1 + 19103 0.67 0.448812
Target:  5'- -gCCuuuUGCGCGCCGACCGcCGcCGc -3'
miRNA:   3'- aaGGuc-AUGCGCGGCUGGCuGCaGUa -5'
28029 5' -57.4 NC_005887.1 + 40154 0.67 0.457832
Target:  5'- -aUCGGUuuGCGCugcccgaucaccgCGGCCGGCGUCAg -3'
miRNA:   3'- aaGGUCAugCGCG-------------GCUGGCUGCAGUa -5'
28029 5' -57.4 NC_005887.1 + 20545 0.67 0.45884
Target:  5'- -cCCGGca-GCGCCG-CgGACGUCGUg -3'
miRNA:   3'- aaGGUCaugCGCGGCuGgCUGCAGUA- -5'
28029 5' -57.4 NC_005887.1 + 23917 0.67 0.409957
Target:  5'- gUCgAGauCGCGCCGAUCaGCGUCGUg -3'
miRNA:   3'- aAGgUCauGCGCGGCUGGcUGCAGUA- -5'
28029 5' -57.4 NC_005887.1 + 21579 0.67 0.438905
Target:  5'- aUCCAGUAC-UGCCGGCau-CGUCGg -3'
miRNA:   3'- aAGGUCAUGcGCGGCUGgcuGCAGUa -5'
28029 5' -57.4 NC_005887.1 + 3471 0.67 0.438905
Target:  5'- gUUCGGgccugGCGCGCUGAUgaucgagcaCGACGUCGg -3'
miRNA:   3'- aAGGUCa----UGCGCGGCUG---------GCUGCAGUa -5'
28029 5' -57.4 NC_005887.1 + 35549 0.68 0.355773
Target:  5'- -gCCAGU-CGCGCagcgugaGGCCGAUGUCc- -3'
miRNA:   3'- aaGGUCAuGCGCGg------CUGGCUGCAGua -5'
28029 5' -57.4 NC_005887.1 + 32128 0.68 0.373264
Target:  5'- -aUCAG-ACGCGCCGuCCGGCG-CGg -3'
miRNA:   3'- aaGGUCaUGCGCGGCuGGCUGCaGUa -5'
28029 5' -57.4 NC_005887.1 + 1003 0.69 0.347246
Target:  5'- -cCCGGcgGCGCGCgGAucguacucaaCCGGCGUCAc -3'
miRNA:   3'- aaGGUCa-UGCGCGgCU----------GGCUGCAGUa -5'
28029 5' -57.4 NC_005887.1 + 27250 0.69 0.347246
Target:  5'- cUgCAucGCGCGCCGGCCcGCGUCGc -3'
miRNA:   3'- aAgGUcaUGCGCGGCUGGcUGCAGUa -5'
28029 5' -57.4 NC_005887.1 + 31426 0.7 0.284358
Target:  5'- -aUCGG-GCGUgagcagGCCGGCCGACGUCAUc -3'
miRNA:   3'- aaGGUCaUGCG------CGGCUGGCUGCAGUA- -5'
28029 5' -57.4 NC_005887.1 + 18136 0.7 0.284358
Target:  5'- -aCCGGcgaagcGCGgGCCG-CCGACGUCGUg -3'
miRNA:   3'- aaGGUCa-----UGCgCGGCuGGCUGCAGUA- -5'
28029 5' -57.4 NC_005887.1 + 13283 0.7 0.287278
Target:  5'- uUUCCGGUAUGCGguugagaacgauguaCCGGCCGGCGa--- -3'
miRNA:   3'- -AAGGUCAUGCGC---------------GGCUGGCUGCagua -5'
28029 5' -57.4 NC_005887.1 + 41813 0.71 0.256447
Target:  5'- aUCCGGcgcgGCGCGCggCGGCCGACG-CGUu -3'
miRNA:   3'- aAGGUCa---UGCGCG--GCUGGCUGCaGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.