Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28029 | 5' | -57.4 | NC_005887.1 | + | 740 | 0.67 | 0.429125 |
Target: 5'- cUCaCGGgcCGCGCCGGCCGcCG-CAc -3' miRNA: 3'- aAG-GUCauGCGCGGCUGGCuGCaGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 1003 | 0.69 | 0.347246 |
Target: 5'- -cCCGGcgGCGCGCgGAucguacucaaCCGGCGUCAc -3' miRNA: 3'- aaGGUCa-UGCGCGgCU----------GGCUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 3471 | 0.67 | 0.438905 |
Target: 5'- gUUCGGgccugGCGCGCUGAUgaucgagcaCGACGUCGg -3' miRNA: 3'- aAGGUCa----UGCGCGGCUG---------GCUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 9977 | 0.72 | 0.207386 |
Target: 5'- gUCCAcaacUACGUGUCGACgGACGUCAc -3' miRNA: 3'- aAGGUc---AUGCGCGGCUGgCUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 13192 | 0.66 | 0.50009 |
Target: 5'- gUCgAGcagGC-CGCCGGCCGACGUg-- -3' miRNA: 3'- aAGgUCa--UGcGCGGCUGGCUGCAgua -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 13283 | 0.7 | 0.287278 |
Target: 5'- uUUCCGGUAUGCGguugagaacgauguaCCGGCCGGCGa--- -3' miRNA: 3'- -AAGGUCAUGCGC---------------GGCUGGCUGCagua -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 14025 | 0.66 | 0.489617 |
Target: 5'- -aCCGccgGCGCGCCG-CCGGCG-CAg -3' miRNA: 3'- aaGGUca-UGCGCGGCuGGCUGCaGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 14600 | 0.66 | 0.479248 |
Target: 5'- -gUCGGUACGCGUaCGGCCGucggcgcCGUCGa -3' miRNA: 3'- aaGGUCAUGCGCG-GCUGGCu------GCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 18136 | 0.7 | 0.284358 |
Target: 5'- -aCCGGcgaagcGCGgGCCG-CCGACGUCGUg -3' miRNA: 3'- aaGGUCa-----UGCgCGGCuGGCUGCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 18404 | 0.71 | 0.239534 |
Target: 5'- -gUCGGUGCGUGCgcagacggccgcgaGGCCGACGUCAUc -3' miRNA: 3'- aaGGUCAUGCGCGg-------------CUGGCUGCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 19103 | 0.67 | 0.448812 |
Target: 5'- -gCCuuuUGCGCGCCGACCGcCGcCGc -3' miRNA: 3'- aaGGuc-AUGCGCGGCUGGCuGCaGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 20545 | 0.67 | 0.45884 |
Target: 5'- -cCCGGca-GCGCCG-CgGACGUCGUg -3' miRNA: 3'- aaGGUCaugCGCGGCuGgCUGCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 21579 | 0.67 | 0.438905 |
Target: 5'- aUCCAGUAC-UGCCGGCau-CGUCGg -3' miRNA: 3'- aAGGUCAUGcGCGGCUGgcuGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 23917 | 0.67 | 0.409957 |
Target: 5'- gUCgAGauCGCGCCGAUCaGCGUCGUg -3' miRNA: 3'- aAGgUCauGCGCGGCUGGcUGCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 24806 | 1.04 | 0.000954 |
Target: 5'- gUUCCAGUACGCGCCGACCGACGUCAUg -3' miRNA: 3'- -AAGGUCAUGCGCGGCUGGCUGCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 26112 | 0.71 | 0.23082 |
Target: 5'- -gCCcGUGCGCucGCCGGCCGGCGUa-- -3' miRNA: 3'- aaGGuCAUGCG--CGGCUGGCUGCAgua -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 27250 | 0.69 | 0.347246 |
Target: 5'- cUgCAucGCGCGCCGGCCcGCGUCGc -3' miRNA: 3'- aAgGUcaUGCGCGGCUGGcUGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 31263 | 0.73 | 0.191186 |
Target: 5'- -aCCAGUACuCGUCGGCCG-CGUCGa -3' miRNA: 3'- aaGGUCAUGcGCGGCUGGCuGCAGUa -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 31318 | 0.73 | 0.186038 |
Target: 5'- -aCCGGUggucacgucccACGUGCCGACCGGgcCGUCGUc -3' miRNA: 3'- aaGGUCA-----------UGCGCGGCUGGCU--GCAGUA- -5' |
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28029 | 5' | -57.4 | NC_005887.1 | + | 31426 | 0.7 | 0.284358 |
Target: 5'- -aUCGG-GCGUgagcagGCCGGCCGACGUCAUc -3' miRNA: 3'- aaGGUCaUGCG------CGGCUGGCUGCAGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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