miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 24538 1.11 0.000364
Target:  5'- cGUGCUCGAGCGACUCGGCGAUCAGCCc -3'
miRNA:   3'- -CACGAGCUCGCUGAGCCGCUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 41524 0.77 0.10483
Target:  5'- gGUGCUCGgcaagauccgcgaGGCG-CUCGGCGcgcacgcgaaGUCAGCCa -3'
miRNA:   3'- -CACGAGC-------------UCGCuGAGCCGC----------UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 1937 0.74 0.188615
Target:  5'- -aGCUCGAGUucGAC-CGGCacGUCGGCCg -3'
miRNA:   3'- caCGAGCUCG--CUGaGCCGc-UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 33906 0.73 0.199071
Target:  5'- -cGCUCGAucGCGuugacgcggaucGCUCGGCGA-UAGCCu -3'
miRNA:   3'- caCGAGCU--CGC------------UGAGCCGCUaGUCGG- -5'
28030 3' -57 NC_005887.1 + 12653 0.73 0.199072
Target:  5'- -gGUUaCGAGUGGgUCGGCGAUUuGCCg -3'
miRNA:   3'- caCGA-GCUCGCUgAGCCGCUAGuCGG- -5'
28030 3' -57 NC_005887.1 + 27351 0.73 0.210029
Target:  5'- -aGCUCGGGCGGCacgccugCGGCcuGcgCGGCCu -3'
miRNA:   3'- caCGAGCUCGCUGa------GCCG--CuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 12710 0.72 0.246051
Target:  5'- -cGCgcgUGAGUGACgaCGGCGAgaUCAGCUa -3'
miRNA:   3'- caCGa--GCUCGCUGa-GCCGCU--AGUCGG- -5'
28030 3' -57 NC_005887.1 + 34026 0.72 0.252531
Target:  5'- cGUGCggcuuguacauuUCGAGCGcACucguccaaUCGGCGuguGUCAGCCg -3'
miRNA:   3'- -CACG------------AGCUCGC-UG--------AGCCGC---UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 37095 0.72 0.252531
Target:  5'- -aGCgggCGAGCacagcCUCGGCGAUCgcgcGGCCg -3'
miRNA:   3'- caCGa--GCUCGcu---GAGCCGCUAG----UCGG- -5'
28030 3' -57 NC_005887.1 + 11008 0.72 0.259151
Target:  5'- gGUGCUCGGGUG---CGGCGGUCuGGUCg -3'
miRNA:   3'- -CACGAGCUCGCugaGCCGCUAG-UCGG- -5'
28030 3' -57 NC_005887.1 + 23237 0.71 0.279859
Target:  5'- -gGCacgCGAGCGg--CGGCGGUCGGCg -3'
miRNA:   3'- caCGa--GCUCGCugaGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 26881 0.71 0.287049
Target:  5'- -aGCUCGAacGCGuCUUGGUGcgCGGUCa -3'
miRNA:   3'- caCGAGCU--CGCuGAGCCGCuaGUCGG- -5'
28030 3' -57 NC_005887.1 + 1686 0.71 0.294383
Target:  5'- gGUGCagGAugguGCGGC-CGGUGAUCGGCg -3'
miRNA:   3'- -CACGagCU----CGCUGaGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 3668 0.71 0.301862
Target:  5'- -cGCUCGAGaaaGACcccgagaagUCGGCGAUCuucuaccacGCCg -3'
miRNA:   3'- caCGAGCUCg--CUG---------AGCCGCUAGu--------CGG- -5'
28030 3' -57 NC_005887.1 + 1927 0.71 0.301862
Target:  5'- -aGC-CGGGCGGCgucaugcgugaCGGCGAUCGGUg -3'
miRNA:   3'- caCGaGCUCGCUGa----------GCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 37099 0.71 0.301862
Target:  5'- -gGUgCGAGCGACaugUCGGUGAUCuGCa -3'
miRNA:   3'- caCGaGCUCGCUG---AGCCGCUAGuCGg -5'
28030 3' -57 NC_005887.1 + 26695 0.71 0.301862
Target:  5'- -aGCUCGGcgcgcaucuGCGACacggcgcccugaUCGGCGAgccCGGCCg -3'
miRNA:   3'- caCGAGCU---------CGCUG------------AGCCGCUa--GUCGG- -5'
28030 3' -57 NC_005887.1 + 1586 0.7 0.312578
Target:  5'- -gGCUCG-GCGGCgcgcggcgcgccaaCGGCGAUC-GCCu -3'
miRNA:   3'- caCGAGCuCGCUGa-------------GCCGCUAGuCGG- -5'
28030 3' -57 NC_005887.1 + 11299 0.7 0.317258
Target:  5'- cUGCUCGcAGCGGC-CGGC--UCGGCa -3'
miRNA:   3'- cACGAGC-UCGCUGaGCCGcuAGUCGg -5'
28030 3' -57 NC_005887.1 + 8245 0.7 0.325175
Target:  5'- cUGC-CGAGCG-CUCGGCG-UCA-CCg -3'
miRNA:   3'- cACGaGCUCGCuGAGCCGCuAGUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.