miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 803 0.66 0.533594
Target:  5'- -aGCUCGcgaucGCGaucaacagccauGCUCGcGCGAUCgcGGCCg -3'
miRNA:   3'- caCGAGCu----CGC------------UGAGC-CGCUAG--UCGG- -5'
28030 3' -57 NC_005887.1 + 814 0.66 0.522924
Target:  5'- cGUGCgcgcCGAGCGcCUCGcG-GAUCuuGCCg -3'
miRNA:   3'- -CACGa---GCUCGCuGAGC-CgCUAGu-CGG- -5'
28030 3' -57 NC_005887.1 + 941 0.67 0.49144
Target:  5'- aGUGCccCGAGUGcUUCGGCGAaggcgugCAGCa -3'
miRNA:   3'- -CACGa-GCUCGCuGAGCCGCUa------GUCGg -5'
28030 3' -57 NC_005887.1 + 1406 0.66 0.533594
Target:  5'- -cGgUCGAGCaugcGCUCGGCGuu--GCCg -3'
miRNA:   3'- caCgAGCUCGc---UGAGCCGCuaguCGG- -5'
28030 3' -57 NC_005887.1 + 1586 0.7 0.312578
Target:  5'- -gGCUCG-GCGGCgcgcggcgcgccaaCGGCGAUC-GCCu -3'
miRNA:   3'- caCGAGCuCGCUGa-------------GCCGCUAGuCGG- -5'
28030 3' -57 NC_005887.1 + 1686 0.71 0.294383
Target:  5'- gGUGCagGAugguGCGGC-CGGUGAUCGGCg -3'
miRNA:   3'- -CACGagCU----CGCUGaGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 1784 0.69 0.384648
Target:  5'- uUGCUCGAGCGcgccgagaACUCGugcGCGAgc-GCCa -3'
miRNA:   3'- cACGAGCUCGC--------UGAGC---CGCUaguCGG- -5'
28030 3' -57 NC_005887.1 + 1927 0.71 0.301862
Target:  5'- -aGC-CGGGCGGCgucaugcgugaCGGCGAUCGGUg -3'
miRNA:   3'- caCGaGCUCGCUGa----------GCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 1937 0.74 0.188615
Target:  5'- -aGCUCGAGUucGAC-CGGCacGUCGGCCg -3'
miRNA:   3'- caCGAGCUCG--CUGaGCCGc-UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 2197 0.67 0.49144
Target:  5'- -aGCUCacacGCGGCgagcgCGGCGcgCAGCg -3'
miRNA:   3'- caCGAGcu--CGCUGa----GCCGCuaGUCGg -5'
28030 3' -57 NC_005887.1 + 3668 0.71 0.301862
Target:  5'- -cGCUCGAGaaaGACcccgagaagUCGGCGAUCuucuaccacGCCg -3'
miRNA:   3'- caCGAGCUCg--CUG---------AGCCGCUAGu--------CGG- -5'
28030 3' -57 NC_005887.1 + 5378 0.66 0.55407
Target:  5'- cUGCUCGAaggcgaagccagcGCGACcggugaacCGGCGggCGGCg -3'
miRNA:   3'- cACGAGCU-------------CGCUGa-------GCCGCuaGUCGg -5'
28030 3' -57 NC_005887.1 + 5961 0.67 0.470945
Target:  5'- -aGCUCGcuGGCG-CgucCGGCGAUgCAGCa -3'
miRNA:   3'- caCGAGC--UCGCuGa--GCCGCUA-GUCGg -5'
28030 3' -57 NC_005887.1 + 6143 0.66 0.543262
Target:  5'- cGUGCUCGAcGcCGAaucguucCUCGGCacggugaucccGGUCGGCa -3'
miRNA:   3'- -CACGAGCU-C-GCU-------GAGCCG-----------CUAGUCGg -5'
28030 3' -57 NC_005887.1 + 6402 0.68 0.441044
Target:  5'- -gGCaCGAGCGACUgcGUGAUCAucGCCg -3'
miRNA:   3'- caCGaGCUCGCUGAgcCGCUAGU--CGG- -5'
28030 3' -57 NC_005887.1 + 6729 0.68 0.420766
Target:  5'- -aGCcCGAGCGACUUcaacccgGGCGAgaagCAGUg -3'
miRNA:   3'- caCGaGCUCGCUGAG-------CCGCUa---GUCGg -5'
28030 3' -57 NC_005887.1 + 6915 0.68 0.421719
Target:  5'- -cGC-CGAGCGAaucccgcaaCUCGGC-AUgGGCCg -3'
miRNA:   3'- caCGaGCUCGCU---------GAGCCGcUAgUCGG- -5'
28030 3' -57 NC_005887.1 + 7474 0.67 0.501841
Target:  5'- -aGCgCGAaCGACaaGGCGAUCgaGGCCg -3'
miRNA:   3'- caCGaGCUcGCUGagCCGCUAG--UCGG- -5'
28030 3' -57 NC_005887.1 + 8050 0.67 0.501841
Target:  5'- cGUGCUCGAcGCGugUCuGCGugcgCAcGUCu -3'
miRNA:   3'- -CACGAGCU-CGCugAGcCGCua--GU-CGG- -5'
28030 3' -57 NC_005887.1 + 8245 0.7 0.325175
Target:  5'- cUGC-CGAGCG-CUCGGCG-UCA-CCg -3'
miRNA:   3'- cACGaGCUCGCuGAGCCGCuAGUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.