miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28030 3' -57 NC_005887.1 + 5961 0.67 0.470945
Target:  5'- -aGCUCGcuGGCG-CgucCGGCGAUgCAGCa -3'
miRNA:   3'- caCGAGC--UCGCuGa--GCCGCUA-GUCGg -5'
28030 3' -57 NC_005887.1 + 37205 0.69 0.358298
Target:  5'- -aGCUCG-GCGuagauCUCGaGCGucuuGUCAGCCc -3'
miRNA:   3'- caCGAGCuCGCu----GAGC-CGC----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 36129 0.69 0.366939
Target:  5'- -cGUcCGGcGUGGCUCGGUGAUCGucucGCCg -3'
miRNA:   3'- caCGaGCU-CGCUGAGCCGCUAGU----CGG- -5'
28030 3' -57 NC_005887.1 + 18565 0.69 0.393712
Target:  5'- -gGCUucgCGGGCGACaugcucgucgCGGCGuuccaGUCGGCCg -3'
miRNA:   3'- caCGA---GCUCGCUGa---------GCCGC-----UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 14375 0.68 0.41225
Target:  5'- cUGUUCGAGuCGccGCUCGGCGcgCGcGCg -3'
miRNA:   3'- cACGAGCUC-GC--UGAGCCGCuaGU-CGg -5'
28030 3' -57 NC_005887.1 + 6915 0.68 0.421719
Target:  5'- -cGC-CGAGCGAaucccgcaaCUCGGC-AUgGGCCg -3'
miRNA:   3'- caCGaGCUCGCU---------GAGCCGcUAgUCGG- -5'
28030 3' -57 NC_005887.1 + 18355 0.68 0.421719
Target:  5'- -cGUUCGGGCGACUuccgcguagaCGGCGcgcCGGCg -3'
miRNA:   3'- caCGAGCUCGCUGA----------GCCGCua-GUCGg -5'
28030 3' -57 NC_005887.1 + 27988 0.68 0.421719
Target:  5'- -gGCUCGGGcCGAaUCGcGUcGUCGGCCg -3'
miRNA:   3'- caCGAGCUC-GCUgAGC-CGcUAGUCGG- -5'
28030 3' -57 NC_005887.1 + 14697 0.68 0.435193
Target:  5'- -gGCUCGucGCGGCgggcgggccgggcgCGGCGAUCGcGCa -3'
miRNA:   3'- caCGAGCu-CGCUGa-------------GCCGCUAGU-CGg -5'
28030 3' -57 NC_005887.1 + 24839 0.69 0.358298
Target:  5'- -cGCuUCGuGCGGaagUCGGCGAUCAgGUCa -3'
miRNA:   3'- caCG-AGCuCGCUg--AGCCGCUAGU-CGG- -5'
28030 3' -57 NC_005887.1 + 13613 0.69 0.358298
Target:  5'- cUGCUgGcagcGCGGCgcgCGGCGGccgcacUCAGCCg -3'
miRNA:   3'- cACGAgCu---CGCUGa--GCCGCU------AGUCGG- -5'
28030 3' -57 NC_005887.1 + 23983 0.7 0.325175
Target:  5'- cUGCUCGAGCG-CgaggCGGCGcUCGGg- -3'
miRNA:   3'- cACGAGCUCGCuGa---GCCGCuAGUCgg -5'
28030 3' -57 NC_005887.1 + 12653 0.73 0.199072
Target:  5'- -gGUUaCGAGUGGgUCGGCGAUUuGCCg -3'
miRNA:   3'- caCGA-GCUCGCUgAGCCGCUAGuCGG- -5'
28030 3' -57 NC_005887.1 + 37095 0.72 0.252531
Target:  5'- -aGCgggCGAGCacagcCUCGGCGAUCgcgcGGCCg -3'
miRNA:   3'- caCGa--GCUCGcu---GAGCCGCUAG----UCGG- -5'
28030 3' -57 NC_005887.1 + 34026 0.72 0.252531
Target:  5'- cGUGCggcuuguacauuUCGAGCGcACucguccaaUCGGCGuguGUCAGCCg -3'
miRNA:   3'- -CACG------------AGCUCGC-UG--------AGCCGC---UAGUCGG- -5'
28030 3' -57 NC_005887.1 + 11008 0.72 0.259151
Target:  5'- gGUGCUCGGGUG---CGGCGGUCuGGUCg -3'
miRNA:   3'- -CACGAGCUCGCugaGCCGCUAG-UCGG- -5'
28030 3' -57 NC_005887.1 + 23237 0.71 0.279859
Target:  5'- -gGCacgCGAGCGg--CGGCGGUCGGCg -3'
miRNA:   3'- caCGa--GCUCGCugaGCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 1927 0.71 0.301862
Target:  5'- -aGC-CGGGCGGCgucaugcgugaCGGCGAUCGGUg -3'
miRNA:   3'- caCGaGCUCGCUGa----------GCCGCUAGUCGg -5'
28030 3' -57 NC_005887.1 + 3668 0.71 0.301862
Target:  5'- -cGCUCGAGaaaGACcccgagaagUCGGCGAUCuucuaccacGCCg -3'
miRNA:   3'- caCGAGCUCg--CUG---------AGCCGCUAGu--------CGG- -5'
28030 3' -57 NC_005887.1 + 11299 0.7 0.317258
Target:  5'- cUGCUCGcAGCGGC-CGGC--UCGGCa -3'
miRNA:   3'- cACGAGC-UCGCUGaGCCGcuAGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.