Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28030 | 3' | -57 | NC_005887.1 | + | 15429 | 0.66 | 0.522924 |
Target: 5'- -gGUUCGucgacggcggccAGCGACUCGG-GcgCAGCUu -3' miRNA: 3'- caCGAGC------------UCGCUGAGCCgCuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 36201 | 0.67 | 0.512338 |
Target: 5'- cGUGC-CGAGgaaCGAUUCGGCG-UCgAGCa -3' miRNA: 3'- -CACGaGCUC---GCUGAGCCGCuAG-UCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 16167 | 0.67 | 0.512338 |
Target: 5'- aGUGCgCGAGCGAUcgaGGCGAaCcugcgcgaagaGGCCg -3' miRNA: 3'- -CACGaGCUCGCUGag-CCGCUaG-----------UCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 36181 | 0.67 | 0.512338 |
Target: 5'- -cGUUCGGGuCGaggcGCUUGGCGAcaUCcGCCa -3' miRNA: 3'- caCGAGCUC-GC----UGAGCCGCU--AGuCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 30372 | 0.67 | 0.501841 |
Target: 5'- -aGCUCG-GUGuaccGCUCGGCG-UC-GCCg -3' miRNA: 3'- caCGAGCuCGC----UGAGCCGCuAGuCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 7474 | 0.67 | 0.501841 |
Target: 5'- -aGCgCGAaCGACaaGGCGAUCgaGGCCg -3' miRNA: 3'- caCGaGCUcGCUGagCCGCUAG--UCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 8050 | 0.67 | 0.501841 |
Target: 5'- cGUGCUCGAcGCGugUCuGCGugcgCAcGUCu -3' miRNA: 3'- -CACGAGCU-CGCugAGcCGCua--GU-CGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 37472 | 0.67 | 0.501841 |
Target: 5'- aGUGCgcCGGauGCGAUcagggCGGCGGUCAGUUc -3' miRNA: 3'- -CACGa-GCU--CGCUGa----GCCGCUAGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 32782 | 0.67 | 0.501841 |
Target: 5'- -gGCUCGuGCGcaggaUCGGCGcgC-GCCg -3' miRNA: 3'- caCGAGCuCGCug---AGCCGCuaGuCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 11848 | 0.67 | 0.500797 |
Target: 5'- -aGCaCGGGCGgaucguuuucgacGCUCGGCGGUCuuucGUCg -3' miRNA: 3'- caCGaGCUCGC-------------UGAGCCGCUAGu---CGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 22773 | 0.67 | 0.49144 |
Target: 5'- cGUGCUCGuuGGCucGACgcCGGCG--CGGCCg -3' miRNA: 3'- -CACGAGC--UCG--CUGa-GCCGCuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 38112 | 0.67 | 0.49144 |
Target: 5'- cGUGCggcCGAGCG--UCGGCGcgagCAGCa -3' miRNA: 3'- -CACGa--GCUCGCugAGCCGCua--GUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 2197 | 0.67 | 0.49144 |
Target: 5'- -aGCUCacacGCGGCgagcgCGGCGcgCAGCg -3' miRNA: 3'- caCGAGcu--CGCUGa----GCCGCuaGUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 15890 | 0.67 | 0.49144 |
Target: 5'- -aGCUCGGuGCG-CUCGaCGcgCAGCUg -3' miRNA: 3'- caCGAGCU-CGCuGAGCcGCuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 941 | 0.67 | 0.49144 |
Target: 5'- aGUGCccCGAGUGcUUCGGCGAaggcgugCAGCa -3' miRNA: 3'- -CACGa-GCUCGCuGAGCCGCUa------GUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 25477 | 0.67 | 0.490405 |
Target: 5'- uUGCUUGggcacaacgcagcGGCGGCUCGGaCGAUggcgCGGCg -3' miRNA: 3'- cACGAGC-------------UCGCUGAGCC-GCUA----GUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 25000 | 0.67 | 0.481139 |
Target: 5'- uUGC-CGAGCGucaGCUCGcGCcggCGGCCg -3' miRNA: 3'- cACGaGCUCGC---UGAGC-CGcuaGUCGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 5961 | 0.67 | 0.470945 |
Target: 5'- -aGCUCGcuGGCG-CgucCGGCGAUgCAGCa -3' miRNA: 3'- caCGAGC--UCGCuGa--GCCGCUA-GUCGg -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 41371 | 0.67 | 0.460861 |
Target: 5'- -gGCaauUUGcGCGugUCGGCGAUCA-CCu -3' miRNA: 3'- caCG---AGCuCGCugAGCCGCUAGUcGG- -5' |
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28030 | 3' | -57 | NC_005887.1 | + | 22858 | 0.68 | 0.450893 |
Target: 5'- aUGCUCGc-CGGCaUCGG-GAUCAGCa -3' miRNA: 3'- cACGAGCucGCUG-AGCCgCUAGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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