miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 24391 1.1 0.000202
Target:  5'- uGCCGGCGAGCCCGCGCAUCAUGUGCGa -3'
miRNA:   3'- -CGGCCGCUCGGGCGCGUAGUACACGC- -5'
28031 5' -60 NC_005887.1 + 26988 0.78 0.056778
Target:  5'- uGCCGGUGAGguucacccaUCCGUGCAccuUCGUGUGCGc -3'
miRNA:   3'- -CGGCCGCUC---------GGGCGCGU---AGUACACGC- -5'
28031 5' -60 NC_005887.1 + 22582 0.75 0.097358
Target:  5'- uGCUGGuCGGGCUCGCa-AUCGUGUGCGu -3'
miRNA:   3'- -CGGCC-GCUCGGGCGcgUAGUACACGC- -5'
28031 5' -60 NC_005887.1 + 34350 0.75 0.099845
Target:  5'- cGCCGGCcacggcuggagacGAGCgccCCGCGUAUCAgaGUGCGg -3'
miRNA:   3'- -CGGCCG-------------CUCG---GGCGCGUAGUa-CACGC- -5'
28031 5' -60 NC_005887.1 + 36996 0.75 0.10588
Target:  5'- cGCCGGCGAGCaCGCGCAggcCGUacGCGa -3'
miRNA:   3'- -CGGCCGCUCGgGCGCGUa--GUAcaCGC- -5'
28031 5' -60 NC_005887.1 + 24214 0.74 0.108874
Target:  5'- cGUCGGCG-GCCCGCGCuucgCcgGUuGCGu -3'
miRNA:   3'- -CGGCCGCuCGGGCGCGua--GuaCA-CGC- -5'
28031 5' -60 NC_005887.1 + 41950 0.74 0.125064
Target:  5'- cCCGGCGuGCUCGCGUGgugCGUGcGCGg -3'
miRNA:   3'- cGGCCGCuCGGGCGCGUa--GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 41617 0.72 0.155658
Target:  5'- gGCCGGCGcGGCCCGUgaggaucugcuGCGUC-UGcGCGg -3'
miRNA:   3'- -CGGCCGC-UCGGGCG-----------CGUAGuACaCGC- -5'
28031 5' -60 NC_005887.1 + 15874 0.71 0.178079
Target:  5'- gGCCGGCauGCCCGUGC-UCGUG-GCc -3'
miRNA:   3'- -CGGCCGcuCGGGCGCGuAGUACaCGc -5'
28031 5' -60 NC_005887.1 + 37445 0.71 0.182895
Target:  5'- aGCgCGGCGcuuGCCUGCGCGguuugCA-GUGCGc -3'
miRNA:   3'- -CG-GCCGCu--CGGGCGCGUa----GUaCACGC- -5'
28031 5' -60 NC_005887.1 + 26727 0.71 0.192872
Target:  5'- aUCGGCGAGCCCG-GCcgCcUGcUGCGc -3'
miRNA:   3'- cGGCCGCUCGGGCgCGuaGuAC-ACGC- -5'
28031 5' -60 NC_005887.1 + 37848 0.71 0.198037
Target:  5'- aGUCGGCGAGCagaCGCGCG--AUGcGCGc -3'
miRNA:   3'- -CGGCCGCUCGg--GCGCGUagUACaCGC- -5'
28031 5' -60 NC_005887.1 + 26082 0.71 0.203323
Target:  5'- cGUCaGCG-GCCCGCGCGgcguuUCAUG-GCGu -3'
miRNA:   3'- -CGGcCGCuCGGGCGCGU-----AGUACaCGC- -5'
28031 5' -60 NC_005887.1 + 26686 0.7 0.219918
Target:  5'- aGCUGGuCGAGCUCgGCGCG-CAUcUGCGa -3'
miRNA:   3'- -CGGCC-GCUCGGG-CGCGUaGUAcACGC- -5'
28031 5' -60 NC_005887.1 + 4792 0.7 0.225702
Target:  5'- aGCCGGCGAGgCCGUGC-UCGcGgaucucGCGc -3'
miRNA:   3'- -CGGCCGCUCgGGCGCGuAGUaCa-----CGC- -5'
28031 5' -60 NC_005887.1 + 36869 0.7 0.225702
Target:  5'- gGCCGGUGcugcgccaucGGCCUGCGuCGUgGUGgaUGCGg -3'
miRNA:   3'- -CGGCCGC----------UCGGGCGC-GUAgUAC--ACGC- -5'
28031 5' -60 NC_005887.1 + 26418 0.7 0.225702
Target:  5'- gGCCGGCGcaucgauuccGGCCCGCGCGgaacgCAgGU-CGg -3'
miRNA:   3'- -CGGCCGC----------UCGGGCGCGUa----GUaCAcGC- -5'
28031 5' -60 NC_005887.1 + 1701 0.7 0.231614
Target:  5'- gGCCGGUGAucgGCgCGCGCucGUCA-GUGCc -3'
miRNA:   3'- -CGGCCGCU---CGgGCGCG--UAGUaCACGc -5'
28031 5' -60 NC_005887.1 + 34256 0.69 0.243829
Target:  5'- aGCgCGGCGAGCUgCGCGCGcgcuuUCGUgaacgaccagacGUGCGc -3'
miRNA:   3'- -CG-GCCGCUCGG-GCGCGU-----AGUA------------CACGC- -5'
28031 5' -60 NC_005887.1 + 41192 0.69 0.249498
Target:  5'- cGCCuGGCugcauccGA-CCCGCGCGUCGUcGUGCc -3'
miRNA:   3'- -CGG-CCG-------CUcGGGCGCGUAGUA-CACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.