miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 647 0.69 0.256575
Target:  5'- cGCgCGGCGAGCgCaCGCGCAUgaccgccgacCAgGUGCu -3'
miRNA:   3'- -CG-GCCGCUCG-G-GCGCGUA----------GUaCACGc -5'
28031 5' -60 NC_005887.1 + 1481 0.67 0.343801
Target:  5'- cGCCGacggcguGCGGcGCUCGCGCGgcgCGgccGUGCGg -3'
miRNA:   3'- -CGGC-------CGCU-CGGGCGCGUa--GUa--CACGC- -5'
28031 5' -60 NC_005887.1 + 1701 0.7 0.231614
Target:  5'- gGCCGGUGAucgGCgCGCGCucGUCA-GUGCc -3'
miRNA:   3'- -CGGCCGCU---CGgGCGCG--UAGUaCACGc -5'
28031 5' -60 NC_005887.1 + 2321 0.66 0.423706
Target:  5'- gGCCGGCcgccucGAG-CCGCGC--CAUGaUGCGc -3'
miRNA:   3'- -CGGCCG------CUCgGGCGCGuaGUAC-ACGC- -5'
28031 5' -60 NC_005887.1 + 2496 0.66 0.396146
Target:  5'- -aCGGCGAGCCCG-GCcugcucGUGCa -3'
miRNA:   3'- cgGCCGCUCGGGCgCGuagua-CACGc -5'
28031 5' -60 NC_005887.1 + 4630 0.66 0.423706
Target:  5'- cGCCGGUGGccGCCgGCGCgAUCAaGgaucucaGCGa -3'
miRNA:   3'- -CGGCCGCU--CGGgCGCG-UAGUaCa------CGC- -5'
28031 5' -60 NC_005887.1 + 4792 0.7 0.225702
Target:  5'- aGCCGGCGAGgCCGUGC-UCGcGgaucucGCGc -3'
miRNA:   3'- -CGGCCGCUCgGGCGCGuAGUaCa-----CGC- -5'
28031 5' -60 NC_005887.1 + 5371 0.66 0.405204
Target:  5'- cGCCGGCGAGCucgacCCGCGCGa-------- -3'
miRNA:   3'- -CGGCCGCUCG-----GGCGCGUaguacacgc -5'
28031 5' -60 NC_005887.1 + 7439 0.66 0.396146
Target:  5'- uUUGGCGcuGGCgUGCGCGUCGUGaucgGCa -3'
miRNA:   3'- cGGCCGC--UCGgGCGCGUAGUACa---CGc -5'
28031 5' -60 NC_005887.1 + 8601 0.69 0.27671
Target:  5'- cGCUGGCGAGCUCuCGCcgUugcucgGUGCa -3'
miRNA:   3'- -CGGCCGCUCGGGcGCGuaGua----CACGc -5'
28031 5' -60 NC_005887.1 + 9608 0.66 0.423706
Target:  5'- cGCCGGCgcgcacgcGAGCgCCGCGCuaccccgcCGUGgGUGa -3'
miRNA:   3'- -CGGCCG--------CUCG-GGCGCGua------GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 10058 0.68 0.298086
Target:  5'- cGCCGGCuGGCCCGaCG-AUCGccccGUGUGg -3'
miRNA:   3'- -CGGCCGcUCGGGC-GCgUAGUa---CACGC- -5'
28031 5' -60 NC_005887.1 + 13371 0.66 0.405204
Target:  5'- cCCGGCGAuggcGCUCGCGCugaaggCcgGcGCGg -3'
miRNA:   3'- cGGCCGCU----CGGGCGCGua----GuaCaCGC- -5'
28031 5' -60 NC_005887.1 + 14473 0.66 0.423706
Target:  5'- cGUCGuGuCGGGCCuCGCGCAgaUCGUGcccgccGCGg -3'
miRNA:   3'- -CGGC-C-GCUCGG-GCGCGU--AGUACa-----CGC- -5'
28031 5' -60 NC_005887.1 + 15874 0.71 0.178079
Target:  5'- gGCCGGCauGCCCGUGC-UCGUG-GCc -3'
miRNA:   3'- -CGGCCGcuCGGGCGCGuAGUACaCGc -5'
28031 5' -60 NC_005887.1 + 16532 0.68 0.283696
Target:  5'- cGCCGGCgccGAGUggGCGCGUCAgcaacucGUGCa -3'
miRNA:   3'- -CGGCCG---CUCGggCGCGUAGUa------CACGc -5'
28031 5' -60 NC_005887.1 + 17396 0.66 0.396146
Target:  5'- gGCCGcGCGcaaggcGGCCCGCGCG-CAccgcGUcGCGa -3'
miRNA:   3'- -CGGC-CGC------UCGGGCGCGUaGUa---CA-CGC- -5'
28031 5' -60 NC_005887.1 + 18114 0.67 0.352864
Target:  5'- uGCCGGCacguGGCCagcaGCGCAUCAaacgGCu -3'
miRNA:   3'- -CGGCCGc---UCGGg---CGCGUAGUaca-CGc -5'
28031 5' -60 NC_005887.1 + 19505 0.68 0.305491
Target:  5'- uGCCGGCGAGCauCgGCGCAg-----GCGa -3'
miRNA:   3'- -CGGCCGCUCG--GgCGCGUaguacaCGC- -5'
28031 5' -60 NC_005887.1 + 20545 0.66 0.423706
Target:  5'- cCCGGC-AGCgCCGCGgaCGUCGUGUugaugccgGCGa -3'
miRNA:   3'- cGGCCGcUCG-GGCGC--GUAGUACA--------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.