miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 2496 0.66 0.396146
Target:  5'- -aCGGCGAGCCCG-GCcugcucGUGCa -3'
miRNA:   3'- cgGCCGCUCGGGCgCGuagua-CACGc -5'
28031 5' -60 NC_005887.1 + 16532 0.68 0.283696
Target:  5'- cGCCGGCgccGAGUggGCGCGUCAgcaacucGUGCa -3'
miRNA:   3'- -CGGCCG---CUCGggCGCGUAGUa------CACGc -5'
28031 5' -60 NC_005887.1 + 19505 0.68 0.305491
Target:  5'- uGCCGGCGAGCauCgGCGCAg-----GCGa -3'
miRNA:   3'- -CGGCCGCUCG--GgCGCGUaguacaCGC- -5'
28031 5' -60 NC_005887.1 + 33190 0.68 0.313036
Target:  5'- gGCCGGaCGAGCCCguccagaugaacGCGCcgCAcUG-GCa -3'
miRNA:   3'- -CGGCC-GCUCGGG------------CGCGuaGU-ACaCGc -5'
28031 5' -60 NC_005887.1 + 28282 0.68 0.313036
Target:  5'- aUCGGCacgccGAGCgCGCGCAgcgUCGUG-GCGa -3'
miRNA:   3'- cGGCCG-----CUCGgGCGCGU---AGUACaCGC- -5'
28031 5' -60 NC_005887.1 + 30205 0.67 0.336513
Target:  5'- cGCCGGCcAGCCaCGCcGCGUCGcG-GCc -3'
miRNA:   3'- -CGGCCGcUCGG-GCG-CGUAGUaCaCGc -5'
28031 5' -60 NC_005887.1 + 1481 0.67 0.343801
Target:  5'- cGCCGacggcguGCGGcGCUCGCGCGgcgCGgccGUGCGg -3'
miRNA:   3'- -CGGC-------CGCU-CGGGCGCGUa--GUa--CACGC- -5'
28031 5' -60 NC_005887.1 + 32438 0.67 0.364639
Target:  5'- gGCCGGCGgcgaucagguugcgcAGCCacuGCGCGgc--GUGCGg -3'
miRNA:   3'- -CGGCCGC---------------UCGGg--CGCGUaguaCACGC- -5'
28031 5' -60 NC_005887.1 + 40859 0.67 0.368054
Target:  5'- aCCGGCGAagccGCCgCGCGCGUCGaagaagaaacGCGa -3'
miRNA:   3'- cGGCCGCU----CGG-GCGCGUAGUaca-------CGC- -5'
28031 5' -60 NC_005887.1 + 8601 0.69 0.27671
Target:  5'- cGCUGGCGAGCUCuCGCcgUugcucgGUGCa -3'
miRNA:   3'- -CGGCCGCUCGGGcGCGuaGua----CACGc -5'
28031 5' -60 NC_005887.1 + 647 0.69 0.256575
Target:  5'- cGCgCGGCGAGCgCaCGCGCAUgaccgccgacCAgGUGCu -3'
miRNA:   3'- -CG-GCCGCUCG-G-GCGCGUA----------GUaCACGc -5'
28031 5' -60 NC_005887.1 + 41192 0.69 0.249498
Target:  5'- cGCCuGGCugcauccGA-CCCGCGCGUCGUcGUGCc -3'
miRNA:   3'- -CGG-CCG-------CUcGGGCGCGUAGUA-CACGc -5'
28031 5' -60 NC_005887.1 + 22582 0.75 0.097358
Target:  5'- uGCUGGuCGGGCUCGCa-AUCGUGUGCGu -3'
miRNA:   3'- -CGGCC-GCUCGGGCGcgUAGUACACGC- -5'
28031 5' -60 NC_005887.1 + 34350 0.75 0.099845
Target:  5'- cGCCGGCcacggcuggagacGAGCgccCCGCGUAUCAgaGUGCGg -3'
miRNA:   3'- -CGGCCG-------------CUCG---GGCGCGUAGUa-CACGC- -5'
28031 5' -60 NC_005887.1 + 36996 0.75 0.10588
Target:  5'- cGCCGGCGAGCaCGCGCAggcCGUacGCGa -3'
miRNA:   3'- -CGGCCGCUCGgGCGCGUa--GUAcaCGC- -5'
28031 5' -60 NC_005887.1 + 41950 0.74 0.125064
Target:  5'- cCCGGCGuGCUCGCGUGgugCGUGcGCGg -3'
miRNA:   3'- cGGCCGCuCGGGCGCGUa--GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 41617 0.72 0.155658
Target:  5'- gGCCGGCGcGGCCCGUgaggaucugcuGCGUC-UGcGCGg -3'
miRNA:   3'- -CGGCCGC-UCGGGCG-----------CGUAGuACaCGC- -5'
28031 5' -60 NC_005887.1 + 37445 0.71 0.182895
Target:  5'- aGCgCGGCGcuuGCCUGCGCGguuugCA-GUGCGc -3'
miRNA:   3'- -CG-GCCGCu--CGGGCGCGUa----GUaCACGC- -5'
28031 5' -60 NC_005887.1 + 26082 0.71 0.203323
Target:  5'- cGUCaGCG-GCCCGCGCGgcguuUCAUG-GCGu -3'
miRNA:   3'- -CGGcCGCuCGGGCGCGU-----AGUACaCGC- -5'
28031 5' -60 NC_005887.1 + 4792 0.7 0.225702
Target:  5'- aGCCGGCGAGgCCGUGC-UCGcGgaucucGCGc -3'
miRNA:   3'- -CGGCCGCUCgGGCGCGuAGUaCa-----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.