miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28031 5' -60 NC_005887.1 + 32438 0.67 0.364639
Target:  5'- gGCCGGCGgcgaucagguugcgcAGCCacuGCGCGgc--GUGCGg -3'
miRNA:   3'- -CGGCCGC---------------UCGGg--CGCGUaguaCACGC- -5'
28031 5' -60 NC_005887.1 + 34122 0.67 0.361247
Target:  5'- uGCCGuucuCGAugcugaacaGCCCGCGCGUgUcgGUGCGc -3'
miRNA:   3'- -CGGCc---GCU---------CGGGCGCGUA-GuaCACGC- -5'
28031 5' -60 NC_005887.1 + 26127 0.67 0.361247
Target:  5'- gGCCGGCGuaucgaucguGaCCUGCGUGUCcgGUcGCa -3'
miRNA:   3'- -CGGCCGCu---------C-GGGCGCGUAGuaCA-CGc -5'
28031 5' -60 NC_005887.1 + 30977 0.67 0.360403
Target:  5'- uCCGGCugcgcuGAcGCCCGCGCugAUCAggcucagUGUGCu -3'
miRNA:   3'- cGGCCG------CU-CGGGCGCG--UAGU-------ACACGc -5'
28031 5' -60 NC_005887.1 + 18114 0.67 0.352864
Target:  5'- uGCCGGCacguGGCCagcaGCGCAUCAaacgGCu -3'
miRNA:   3'- -CGGCCGc---UCGGg---CGCGUAGUaca-CGc -5'
28031 5' -60 NC_005887.1 + 40866 0.67 0.344618
Target:  5'- cGCCGcGCGAGCgCCGCacgccgucgGCGUCGg--GCu -3'
miRNA:   3'- -CGGC-CGCUCG-GGCG---------CGUAGUacaCGc -5'
28031 5' -60 NC_005887.1 + 33260 0.67 0.344618
Target:  5'- cGCCGGU--GCCCGCGCuggCA--UGCa -3'
miRNA:   3'- -CGGCCGcuCGGGCGCGua-GUacACGc -5'
28031 5' -60 NC_005887.1 + 1481 0.67 0.343801
Target:  5'- cGCCGacggcguGCGGcGCUCGCGCGgcgCGgccGUGCGg -3'
miRNA:   3'- -CGGC-------CGCU-CGGGCGCGUa--GUa--CACGC- -5'
28031 5' -60 NC_005887.1 + 30205 0.67 0.336513
Target:  5'- cGCCGGCcAGCCaCGCcGCGUCGcG-GCc -3'
miRNA:   3'- -CGGCCGcUCGG-GCG-CGUAGUaCaCGc -5'
28031 5' -60 NC_005887.1 + 28041 0.67 0.333309
Target:  5'- uGUCGGCGucGGCCUGCGCuugcggguucagCGUGaGCGu -3'
miRNA:   3'- -CGGCCGC--UCGGGCGCGua----------GUACaCGC- -5'
28031 5' -60 NC_005887.1 + 33190 0.68 0.313036
Target:  5'- gGCCGGaCGAGCCCguccagaugaacGCGCcgCAcUG-GCa -3'
miRNA:   3'- -CGGCC-GCUCGGG------------CGCGuaGU-ACaCGc -5'
28031 5' -60 NC_005887.1 + 28282 0.68 0.313036
Target:  5'- aUCGGCacgccGAGCgCGCGCAgcgUCGUG-GCGa -3'
miRNA:   3'- cGGCCG-----CUCGgGCGCGU---AGUACaCGC- -5'
28031 5' -60 NC_005887.1 + 27080 0.68 0.313036
Target:  5'- cGCCGGCGGacGCucgCCGCGCAgCAc-UGCGg -3'
miRNA:   3'- -CGGCCGCU--CG---GGCGCGUaGUacACGC- -5'
28031 5' -60 NC_005887.1 + 19505 0.68 0.305491
Target:  5'- uGCCGGCGAGCauCgGCGCAg-----GCGa -3'
miRNA:   3'- -CGGCCGCUCG--GgCGCGUaguacaCGC- -5'
28031 5' -60 NC_005887.1 + 10058 0.68 0.298086
Target:  5'- cGCCGGCuGGCCCGaCG-AUCGccccGUGUGg -3'
miRNA:   3'- -CGGCCGcUCGGGC-GCgUAGUa---CACGC- -5'
28031 5' -60 NC_005887.1 + 26872 0.68 0.298086
Target:  5'- cGCgCGGCcAGCUCGaaCGCGUCuugGUGCGc -3'
miRNA:   3'- -CG-GCCGcUCGGGC--GCGUAGua-CACGC- -5'
28031 5' -60 NC_005887.1 + 16532 0.68 0.283696
Target:  5'- cGCCGGCgccGAGUggGCGCGUCAgcaacucGUGCa -3'
miRNA:   3'- -CGGCCG---CUCGggCGCGUAGUa------CACGc -5'
28031 5' -60 NC_005887.1 + 32331 0.68 0.283696
Target:  5'- uGCCaGCGcGgCCGCGCGUgAUGUGg- -3'
miRNA:   3'- -CGGcCGCuCgGGCGCGUAgUACACgc -5'
28031 5' -60 NC_005887.1 + 8601 0.69 0.27671
Target:  5'- cGCUGGCGAGCUCuCGCcgUugcucgGUGCa -3'
miRNA:   3'- -CGGCCGCUCGGGcGCGuaGua----CACGc -5'
28031 5' -60 NC_005887.1 + 647 0.69 0.256575
Target:  5'- cGCgCGGCGAGCgCaCGCGCAUgaccgccgacCAgGUGCu -3'
miRNA:   3'- -CG-GCCGCUCG-G-GCGCGUA----------GUaCACGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.