miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 3' -53 NC_005887.1 + 30264 0.81 0.107028
Target:  5'- cGCUUGCCgUCCggCGCGAcgAUCGUGCCg -3'
miRNA:   3'- uUGAGCGGaAGGa-GCGCU--UAGUACGG- -5'
28032 3' -53 NC_005887.1 + 26374 0.66 0.758219
Target:  5'- -uCUUGCCagcgUUCCagUCGCGGAUCGucUGCg -3'
miRNA:   3'- uuGAGCGG----AAGG--AGCGCUUAGU--ACGg -5'
28032 3' -53 NC_005887.1 + 3966 0.66 0.758219
Target:  5'- cGACcCGCCgUUgCUCGCGAAcgaggaggCGUGCUu -3'
miRNA:   3'- -UUGaGCGG-AAgGAGCGCUUa-------GUACGG- -5'
28032 3' -53 NC_005887.1 + 4806 0.66 0.73652
Target:  5'- uGCUCGCggaUCUCGCGcAGUUcUGCCg -3'
miRNA:   3'- uUGAGCGgaaGGAGCGC-UUAGuACGG- -5'
28032 3' -53 NC_005887.1 + 36425 0.67 0.691855
Target:  5'- cAC-CGCCUUCCgCGCGGccggcuUCuUGCCc -3'
miRNA:   3'- uUGaGCGGAAGGaGCGCUu-----AGuACGG- -5'
28032 3' -53 NC_005887.1 + 6852 0.67 0.691855
Target:  5'- cGACgUGUCggaCCUCGCGAcgUcgGCCa -3'
miRNA:   3'- -UUGaGCGGaa-GGAGCGCUuaGuaCGG- -5'
28032 3' -53 NC_005887.1 + 18555 0.67 0.669094
Target:  5'- cGGCggCGCCggCUUCGCGGGcgaCAUGCUc -3'
miRNA:   3'- -UUGa-GCGGaaGGAGCGCUUa--GUACGG- -5'
28032 3' -53 NC_005887.1 + 33116 0.68 0.622066
Target:  5'- cGGCUUGCgUUCCUCGCcguugcgucgguaGAAgcagccgacCGUGCCg -3'
miRNA:   3'- -UUGAGCGgAAGGAGCG-------------CUUa--------GUACGG- -5'
28032 3' -53 NC_005887.1 + 36152 0.69 0.588852
Target:  5'- -uCUCGCCgguuUCCucgUCGCGGcgcGUCAccgUGCCg -3'
miRNA:   3'- uuGAGCGGa---AGG---AGCGCU---UAGU---ACGG- -5'
28032 3' -53 NC_005887.1 + 29713 0.7 0.4996
Target:  5'- cACUCGCCgucgCgUCGCaGGAUCAcgcGCCg -3'
miRNA:   3'- uUGAGCGGaa--GgAGCG-CUUAGUa--CGG- -5'
28032 3' -53 NC_005887.1 + 26151 0.7 0.488836
Target:  5'- cGCUCGaCgacgUCCUCGUcGAUCGUGUCg -3'
miRNA:   3'- uUGAGCgGa---AGGAGCGcUUAGUACGG- -5'
28032 3' -53 NC_005887.1 + 14470 0.71 0.436772
Target:  5'- aGGCgucgUGUCgggCCUCGCGcaGAUCGUGCCc -3'
miRNA:   3'- -UUGa---GCGGaa-GGAGCGC--UUAGUACGG- -5'
28032 3' -53 NC_005887.1 + 23171 0.73 0.368671
Target:  5'- uGGCUUGCCUUUCUCGuCGcgcucgcGAUCAcgGCCg -3'
miRNA:   3'- -UUGAGCGGAAGGAGC-GC-------UUAGUa-CGG- -5'
28032 3' -53 NC_005887.1 + 40922 0.68 0.60028
Target:  5'- ---aCGCCUUCCagcagcUCGCGuucGUCuUGCCg -3'
miRNA:   3'- uugaGCGGAAGG------AGCGCu--UAGuACGG- -5'
28032 3' -53 NC_005887.1 + 25499 0.68 0.611737
Target:  5'- ---gCGCCgcgguacaCCUCGCGGAUgAUGUCg -3'
miRNA:   3'- uugaGCGGaa------GGAGCGCUUAgUACGG- -5'
28032 3' -53 NC_005887.1 + 27796 0.67 0.6805
Target:  5'- ----gGUCUUCCgcgCGCGA--CAUGCCg -3'
miRNA:   3'- uugagCGGAAGGa--GCGCUuaGUACGG- -5'
28032 3' -53 NC_005887.1 + 38046 0.67 0.691855
Target:  5'- cAGCUgGCCggCCUCGgCGAGg-AUGUCg -3'
miRNA:   3'- -UUGAgCGGaaGGAGC-GCUUagUACGG- -5'
28032 3' -53 NC_005887.1 + 26119 0.67 0.691855
Target:  5'- cGCUCGCCggCCg-GCGuaucGAUCGUGaCCu -3'
miRNA:   3'- uUGAGCGGaaGGagCGC----UUAGUAC-GG- -5'
28032 3' -53 NC_005887.1 + 37793 0.67 0.703147
Target:  5'- uGCUgCGCCUgcaguUCCUCGuCGGugcUCAUcGCCu -3'
miRNA:   3'- uUGA-GCGGA-----AGGAGC-GCUu--AGUA-CGG- -5'
28032 3' -53 NC_005887.1 + 24170 1.11 0.000815
Target:  5'- gAACUCGCCUUCCUCGCGAAUCAUGCCg -3'
miRNA:   3'- -UUGAGCGGAAGGAGCGCUUAGUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.