Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 29378 | 0.66 | 0.266965 |
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Target: 5'- gCGGCAUGcCcUCGGCccauGCCgGCGCg -3' miRNA: 3'- aGCCGUGCuGcAGCCGc---CGGgCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 14567 | 0.66 | 0.266965 |
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Target: 5'- gUCGGCGcCGuCGUCauGGCGcucuaccucGCCgGCGCg -3' miRNA: 3'- -AGCCGU-GCuGCAG--CCGC---------CGGgCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 30128 | 0.66 | 0.266965 |
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Target: 5'- -aGGUuuGGCGUgaaaucCGGCGcGCCCgGCGCg -3' miRNA: 3'- agCCGugCUGCA------GCCGC-CGGG-CGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 32731 | 0.66 | 0.273535 |
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Target: 5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3' miRNA: 3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 34947 | 0.66 | 0.273535 |
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Target: 5'- cCGGCuuCGAacUCGGCgGGCgUGCGCa -3' miRNA: 3'- aGCCGu-GCUgcAGCCG-CCGgGCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 13493 | 0.65 | 0.27821 |
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Target: 5'- cCGGCgcaucuuuccgaaaACGAUGUCuGGCGuCCCGgGCc -3' miRNA: 3'- aGCCG--------------UGCUGCAG-CCGCcGGGCgCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 24501 | 0.65 | 0.279558 |
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Target: 5'- gUCGuCGCGAgguUGUCGGUGccccaccgauugaGCCCGUGCUc -3' miRNA: 3'- -AGCcGUGCU---GCAGCCGC-------------CGGGCGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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