Results 121 - 127 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 13397 | 0.8 | 0.024805 |
|
Target: 5'- cCGGCGCggcgGACGUCGGCGGCaagCCGCuGCUg -3' miRNA: 3'- aGCCGUG----CUGCAGCCGCCG---GGCG-CGA- -5' |
|||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 41590 | 0.8 | 0.021538 |
|
Target: 5'- gUCGGCcaGCGGCGgcccaggugCGGCGGCCgGCGCg -3' miRNA: 3'- -AGCCG--UGCUGCa--------GCCGCCGGgCGCGa -5' |
|||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 24383 | 0.81 | 0.018175 |
|
Target: 5'- gCGGC-CGAUGcCGGCGaGCCCGCGCa -3' miRNA: 3'- aGCCGuGCUGCaGCCGC-CGGGCGCGa -5' |
|||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 41815 | 0.82 | 0.016694 |
|
Target: 5'- cCGGCGCGGCGcgCGGCGGCCgaCGCGUUc -3' miRNA: 3'- aGCCGUGCUGCa-GCCGCCGG--GCGCGA- -5' |
|||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 18622 | 0.82 | 0.016228 |
|
Target: 5'- cUCGGCAgcGCGaUCGGCGGCCCGCuGCUg -3' miRNA: 3'- -AGCCGUgcUGC-AGCCGCCGGGCG-CGA- -5' |
|||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 26409 | 0.82 | 0.015774 |
|
Target: 5'- gCGGCGCGugGcCGGCgcaucgauuccGGCCCGCGCg -3' miRNA: 3'- aGCCGUGCugCaGCCG-----------CCGGGCGCGa -5' |
|||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 24204 | 1.07 | 0.000179 |
|
Target: 5'- uUCGGCACGACGUCGGCGGCCCGCGCUu -3' miRNA: 3'- -AGCCGUGCUGCAGCCGCCGGGCGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home