Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 29378 | 0.66 | 0.266965 |
Target: 5'- gCGGCAUGcCcUCGGCccauGCCgGCGCg -3' miRNA: 3'- aGCCGUGCuGcAGCCGc---CGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 29486 | 0.7 | 0.14102 |
Target: 5'- aCaGCACGAUGUcguagcCGGCGGCCUcgacggcggGCGCg -3' miRNA: 3'- aGcCGUGCUGCA------GCCGCCGGG---------CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 29769 | 0.67 | 0.236018 |
Target: 5'- gCGGC-CGG-GUCGGCGGacaCCauGCGCa -3' miRNA: 3'- aGCCGuGCUgCAGCCGCCg--GG--CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30128 | 0.66 | 0.266965 |
Target: 5'- -aGGUuuGGCGUgaaaucCGGCGcGCCCgGCGCg -3' miRNA: 3'- agCCGugCUGCA------GCCGC-CGGG-CGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30152 | 0.68 | 0.194792 |
Target: 5'- gUCGGCGcCGAUGcCGGCGucgaagucgcggaacGCCUGCaGCUu -3' miRNA: 3'- -AGCCGU-GCUGCaGCCGC---------------CGGGCG-CGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30217 | 0.73 | 0.082252 |
Target: 5'- cUGGCGCG-CGaCGGCGGCCUgcucguccugGCGCUu -3' miRNA: 3'- aGCCGUGCuGCaGCCGCCGGG----------CGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30435 | 0.67 | 0.236018 |
Target: 5'- -aGGC-CGACGUCGG-GGCggggcauguugCCGgGCUg -3' miRNA: 3'- agCCGuGCUGCAGCCgCCG-----------GGCgCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30476 | 0.7 | 0.14102 |
Target: 5'- gCGGUGCG-CGaC-GCGGCCCGUGCg -3' miRNA: 3'- aGCCGUGCuGCaGcCGCCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30946 | 0.75 | 0.051433 |
Target: 5'- cUCGGCgguGAUGUCGGC-GCCCGCGUa -3' miRNA: 3'- -AGCCGug-CUGCAGCCGcCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32290 | 0.68 | 0.192807 |
Target: 5'- aCGGgGCGAuCGUCGGgcCaGCCgGCGCg -3' miRNA: 3'- aGCCgUGCU-GCAGCC--GcCGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32425 | 0.68 | 0.192313 |
Target: 5'- cCGGCgGCGAUGUggcCGGCGGCgaucaggUUGCGCa -3' miRNA: 3'- aGCCG-UGCUGCA---GCCGCCG-------GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32503 | 0.68 | 0.192807 |
Target: 5'- gCGGCgcGCGGCGUUcaGGuuGgCCGCGCUg -3' miRNA: 3'- aGCCG--UGCUGCAG--CCgcCgGGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32731 | 0.66 | 0.273535 |
Target: 5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3' miRNA: 3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32974 | 0.66 | 0.241358 |
Target: 5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3' miRNA: 3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33206 | 0.72 | 0.089276 |
Target: 5'- aCGuGC-CGACGUCGGaCGGCCUgaauaccgauGCGCUu -3' miRNA: 3'- aGC-CGuGCUGCAGCC-GCCGGG----------CGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33252 | 0.69 | 0.148666 |
Target: 5'- -aGuaACGGCGcCGGU-GCCCGCGCUg -3' miRNA: 3'- agCcgUGCUGCaGCCGcCGGGCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33417 | 0.67 | 0.236018 |
Target: 5'- gUCGGCGCucuGCGUCGcGCGGaUCGCGa- -3' miRNA: 3'- -AGCCGUGc--UGCAGC-CGCCgGGCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33476 | 0.67 | 0.224506 |
Target: 5'- gCGcGUACGGCGUCgcgaucucgacgGGCGcGCCgGCGUUc -3' miRNA: 3'- aGC-CGUGCUGCAG------------CCGC-CGGgCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 33833 | 0.66 | 0.254208 |
Target: 5'- gUCGGCGCGGCGaUCgaacgcaugcagGGCGuacgaGCCUGCGg- -3' miRNA: 3'- -AGCCGUGCUGC-AG------------CCGC-----CGGGCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 34242 | 0.68 | 0.202913 |
Target: 5'- gCGGCGCcucGGCGagcgCGGCGaGCUgCGCGCg -3' miRNA: 3'- aGCCGUG---CUGCa---GCCGC-CGG-GCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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