Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 2507 | 0.71 | 0.113916 |
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Target: 5'- gCGGUcgauUGAUGUgcgaCGGCGGCCCGuCGCg -3' miRNA: 3'- aGCCGu---GCUGCA----GCCGCCGGGC-GCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 1984 | 0.73 | 0.082252 |
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Target: 5'- cUCGcGCGCGACGgCGGCacGG-CCGCGCUc -3' miRNA: 3'- -AGC-CGUGCUGCaGCCG--CCgGGCGCGA- -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 1486 | 0.71 | 0.117017 |
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Target: 5'- aCGGCguGCGGCGcUCGcGCGGCgcggCCGUGCg -3' miRNA: 3'- aGCCG--UGCUGC-AGC-CGCCG----GGCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 1435 | 0.69 | 0.160844 |
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Target: 5'- cUCGGUGCGcGCGcgguagcccuUCGGCGGCUCGuCGUc -3' miRNA: 3'- -AGCCGUGC-UGC----------AGCCGCCGGGC-GCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 860 | 0.67 | 0.218931 |
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Target: 5'- -aGGUGCccGugGaCGcGUGGCCCGCGCc -3' miRNA: 3'- agCCGUG--CugCaGC-CGCCGGGCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 585 | 0.71 | 0.116704 |
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Target: 5'- gUCGGCACGACcUCGaucGUGgucuucgaccagaGCCCGCGCg -3' miRNA: 3'- -AGCCGUGCUGcAGC---CGC-------------CGGGCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 345 | 0.66 | 0.260523 |
|
Target: 5'- gCGGCGacacuCGACGUgGGCcGCaggCCGUGCUg -3' miRNA: 3'- aGCCGU-----GCUGCAgCCGcCG---GGCGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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