Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28032 | 5' | -64.1 | NC_005887.1 | + | 37766 | 0.68 | 0.202913 |
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Target: 5'- aUCuGCGCGGCcugcgccUCGGCGGCuuGCuGCg -3' miRNA: 3'- -AGcCGUGCUGc------AGCCGCCGggCG-CGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 29097 | 0.67 | 0.213475 |
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Target: 5'- aUCGGCaACGAauCGaCGGCGGUCaGCGUc -3' miRNA: 3'- -AGCCG-UGCU--GCaGCCGCCGGgCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 41658 | 0.67 | 0.2151 |
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Target: 5'- gUCGGCGagcagcaucgacuCGGCGagcagcagcaccuggUCGGCGGUCaUGCGCg -3' miRNA: 3'- -AGCCGU-------------GCUGC---------------AGCCGCCGG-GCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 26697 | 0.67 | 0.217282 |
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Target: 5'- cUCGGCGCGcaucuGCGacacggcgcccugaUCGGCGaGCCCGgcCGCc -3' miRNA: 3'- -AGCCGUGC-----UGC--------------AGCCGC-CGGGC--GCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 11520 | 0.67 | 0.222262 |
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Target: 5'- gCGGCAUgcagaugGACGUCGaacuggccgaggccGCGGUgCGCGCc -3' miRNA: 3'- aGCCGUG-------CUGCAGC--------------CGCCGgGCGCGa -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 33476 | 0.67 | 0.224506 |
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Target: 5'- gCGcGUACGGCGUCgcgaucucgacgGGCGcGCCgGCGUUc -3' miRNA: 3'- aGC-CGUGCUGCAG------------CCGC-CGGgCGCGA- -5' |
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| 28032 | 5' | -64.1 | NC_005887.1 | + | 24501 | 0.65 | 0.279558 |
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Target: 5'- gUCGuCGCGAgguUGUCGGUGccccaccgauugaGCCCGUGCUc -3' miRNA: 3'- -AGCcGUGCU---GCAGCCGC-------------CGGGCGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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