miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28032 5' -64.1 NC_005887.1 + 26072 0.77 0.037826
Target:  5'- cUGGUcaGCG-CGUCaGCGGCCCGCGCg -3'
miRNA:   3'- aGCCG--UGCuGCAGcCGCCGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 35679 0.66 0.241957
Target:  5'- gCaGCGCG-CGaUCGGCGGCCgGCuucGCg -3'
miRNA:   3'- aGcCGUGCuGC-AGCCGCCGGgCG---CGa -5'
28032 5' -64.1 NC_005887.1 + 15549 0.69 0.160844
Target:  5'- -gGGCgACGAC-UCGGCGcGCgcgaCCGCGCUc -3'
miRNA:   3'- agCCG-UGCUGcAGCCGC-CG----GGCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 9786 0.69 0.160844
Target:  5'- aUCGGCAUGACGggcgaugagUgGGUgauugGGCCCGCGa- -3'
miRNA:   3'- -AGCCGUGCUGC---------AgCCG-----CCGGGCGCga -5'
28032 5' -64.1 NC_005887.1 + 26205 0.73 0.084532
Target:  5'- aCGGgGCGGCGgUGGcCGGCCUGCaGCUg -3'
miRNA:   3'- aGCCgUGCUGCaGCC-GCCGGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 15845 0.72 0.094272
Target:  5'- gCGGCGCGAuCGagGGaaacGCCCGCGCg -3'
miRNA:   3'- aGCCGUGCU-GCagCCgc--CGGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 3493 0.71 0.112092
Target:  5'- aUCGaGCACGACGUCGGCaagGGCaucgucuaccgcaaCGUGCc -3'
miRNA:   3'- -AGC-CGUGCUGCAGCCG---CCGg-------------GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 22780 0.67 0.224506
Target:  5'- gUUGGCuCGACGcCGGCGcGgCCGCuGUUg -3'
miRNA:   3'- -AGCCGuGCUGCaGCCGC-CgGGCG-CGA- -5'
28032 5' -64.1 NC_005887.1 + 40499 0.67 0.224506
Target:  5'- gUGGCGCGACGUCGuguuCGGCauccaccaCGCGg- -3'
miRNA:   3'- aGCCGUGCUGCAGCc---GCCGg-------GCGCga -5'
28032 5' -64.1 NC_005887.1 + 25510 0.69 0.156688
Target:  5'- aUGGCGCGGCGggUGGCGGCauaauCGuCGCc -3'
miRNA:   3'- aGCCGUGCUGCa-GCCGCCGg----GC-GCGa -5'
28032 5' -64.1 NC_005887.1 + 8697 0.67 0.236018
Target:  5'- -gGGCcCGGCGauccgccgCGGCGGUaaGCGCUu -3'
miRNA:   3'- agCCGuGCUGCa-------GCCGCCGggCGCGA- -5'
28032 5' -64.1 NC_005887.1 + 12868 0.67 0.236018
Target:  5'- -aGGCACGACcgUGGCaGGUgCCGUGCg -3'
miRNA:   3'- agCCGUGCUGcaGCCG-CCG-GGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 30435 0.67 0.236018
Target:  5'- -aGGC-CGACGUCGG-GGCggggcauguugCCGgGCUg -3'
miRNA:   3'- agCCGuGCUGCAGCCgCCG-----------GGCgCGA- -5'
28032 5' -64.1 NC_005887.1 + 18340 0.67 0.236018
Target:  5'- aUCGGCgacauGCGACGUUcgGGCGacuUCCGCGUa -3'
miRNA:   3'- -AGCCG-----UGCUGCAG--CCGCc--GGGCGCGa -5'
28032 5' -64.1 NC_005887.1 + 32974 0.66 0.241358
Target:  5'- gCGGCGCGAaacugcucuuguuCcUCGGUGGUCaUGCGCg -3'
miRNA:   3'- aGCCGUGCU-------------GcAGCCGCCGG-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 40788 0.66 0.241957
Target:  5'- cCGGCGguCGAgGUucgUGGCGGCgaCGCGCc -3'
miRNA:   3'- aGCCGU--GCUgCA---GCCGCCGg-GCGCGa -5'
28032 5' -64.1 NC_005887.1 + 17744 0.66 0.24802
Target:  5'- cUCGGCACGGC--CGcGCGGCUgaugGCGCc -3'
miRNA:   3'- -AGCCGUGCUGcaGC-CGCCGGg---CGCGa -5'
28032 5' -64.1 NC_005887.1 + 13619 0.66 0.254208
Target:  5'- gCaGCGCGGCGcgCGGCGG-CCGCa-- -3'
miRNA:   3'- aGcCGUGCUGCa-GCCGCCgGGCGcga -5'
28032 5' -64.1 NC_005887.1 + 18937 0.66 0.254208
Target:  5'- cUCGcaGCGGcCGUCGGCGGCCaauaCGCa -3'
miRNA:   3'- -AGCcgUGCU-GCAGCCGCCGGgc--GCGa -5'
28032 5' -64.1 NC_005887.1 + 15439 0.67 0.229626
Target:  5'- uUCGGUcaaccggACGACGUCGccGCGaugaCCGCGCa -3'
miRNA:   3'- -AGCCG-------UGCUGCAGC--CGCcg--GGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.