Results 101 - 120 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28032 | 5' | -64.1 | NC_005887.1 | + | 12868 | 0.67 | 0.236018 |
Target: 5'- -aGGCACGACcgUGGCaGGUgCCGUGCg -3' miRNA: 3'- agCCGUGCUGcaGCCG-CCG-GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 8697 | 0.67 | 0.236018 |
Target: 5'- -gGGCcCGGCGauccgccgCGGCGGUaaGCGCUu -3' miRNA: 3'- agCCGuGCUGCa-------GCCGCCGggCGCGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 15439 | 0.67 | 0.229626 |
Target: 5'- uUCGGUcaaccggACGACGUCGccGCGaugaCCGCGCa -3' miRNA: 3'- -AGCCG-------UGCUGCAGC--CGCcg--GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 29378 | 0.66 | 0.266965 |
Target: 5'- gCGGCAUGcCcUCGGCccauGCCgGCGCg -3' miRNA: 3'- aGCCGUGCuGcAGCCGc---CGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32731 | 0.66 | 0.273535 |
Target: 5'- aCGGCgggguagcGCGGCGcucgCGuGCGcGCCgGCGCg -3' miRNA: 3'- aGCCG--------UGCUGCa---GC-CGC-CGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 11551 | 0.68 | 0.178476 |
Target: 5'- cUCGGCGCGcaGCGcgCGGCGG-UCGCGg- -3' miRNA: 3'- -AGCCGUGC--UGCa-GCCGCCgGGCGCga -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14642 | 0.68 | 0.183145 |
Target: 5'- aCGGCAgcCGGCG-CGGUGcuGCCCGuCGCc -3' miRNA: 3'- aGCCGU--GCUGCaGCCGC--CGGGC-GCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32425 | 0.68 | 0.192313 |
Target: 5'- cCGGCgGCGAUGUggcCGGCGGCgaucaggUUGCGCa -3' miRNA: 3'- aGCCG-UGCUGCA---GCCGCCG-------GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 21797 | 0.68 | 0.192807 |
Target: 5'- cCGGCaucaacACGACGUCcGCGGCgcugCCGgGCg -3' miRNA: 3'- aGCCG------UGCUGCAGcCGCCG----GGCgCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 6858 | 0.68 | 0.192807 |
Target: 5'- gUCGGaccuCGCGACGUCGGCcaa-CGCGCa -3' miRNA: 3'- -AGCC----GUGCUGCAGCCGccggGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 32290 | 0.68 | 0.192807 |
Target: 5'- aCGGgGCGAuCGUCGGgcCaGCCgGCGCg -3' miRNA: 3'- aGCCgUGCU-GCAGCC--GcCGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 30152 | 0.68 | 0.194792 |
Target: 5'- gUCGGCGcCGAUGcCGGCGucgaagucgcggaacGCCUGCaGCUu -3' miRNA: 3'- -AGCCGU-GCUGCaGCCGC---------------CGGGCG-CGA- -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14600 | 0.68 | 0.197803 |
Target: 5'- gUCGGUACG-CGUaCGGCcGUCgGCGCc -3' miRNA: 3'- -AGCCGUGCuGCA-GCCGcCGGgCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 36299 | 0.67 | 0.207609 |
Target: 5'- cCGGUugGccgaucuGCG-CGGCGGUcgacgCCGCGCa -3' miRNA: 3'- aGCCGugC-------UGCaGCCGCCG-----GGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 9025 | 0.67 | 0.213475 |
Target: 5'- cUCuGCAgcccgUGACGuuugUCGGCGGCCCGUucGCg -3' miRNA: 3'- -AGcCGU-----GCUGC----AGCCGCCGGGCG--CGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 12599 | 0.67 | 0.212936 |
Target: 5'- cCGGcCGCGACGcUCGGCGugcugacgcagaaGCCCGaccaGCc -3' miRNA: 3'- aGCC-GUGCUGC-AGCCGC-------------CGGGCg---CGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 860 | 0.67 | 0.218931 |
Target: 5'- -aGGUGCccGugGaCGcGUGGCCCGCGCc -3' miRNA: 3'- agCCGUG--CugCaGC-CGCCGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 14463 | 0.67 | 0.218931 |
Target: 5'- cCGuGCAaGGCGUCGuGUcgGGCCuCGCGCa -3' miRNA: 3'- aGC-CGUgCUGCAGC-CG--CCGG-GCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 36036 | 0.67 | 0.222821 |
Target: 5'- cUCGGCGcCGGCGa-GGCGcaaggccucgacgcGCUCGCGCa -3' miRNA: 3'- -AGCCGU-GCUGCagCCGC--------------CGGGCGCGa -5' |
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28032 | 5' | -64.1 | NC_005887.1 | + | 34947 | 0.66 | 0.273535 |
Target: 5'- cCGGCuuCGAacUCGGCgGGCgUGCGCa -3' miRNA: 3'- aGCCGu-GCUgcAGCCG-CCGgGCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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