miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28033 5' -60.3 NC_005887.1 + 23369 1.1 0.000154
Target:  5'- uAGACUGCGCCAUGCUGCCGCGUGCCCu -3'
miRNA:   3'- -UCUGACGCGGUACGACGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 17891 0.75 0.090764
Target:  5'- cGGCcGCGCCAacgGCcugaUGCUGCGUGUCCu -3'
miRNA:   3'- uCUGaCGCGGUa--CG----ACGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 11131 0.72 0.13814
Target:  5'- cGAUcGCGUCGUGCUGaagcaCGCGgcGCCCg -3'
miRNA:   3'- uCUGaCGCGGUACGACg----GCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 32763 0.72 0.138141
Target:  5'- cGGCgcGCGCCAUGCaGCCGgcuCGUGCgCa -3'
miRNA:   3'- uCUGa-CGCGGUACGaCGGC---GCACGgG- -5'
28033 5' -60.3 NC_005887.1 + 27713 0.72 0.142001
Target:  5'- cAGcACcGCGCCG-GCUGCCGUGagcgcGCCCu -3'
miRNA:   3'- -UC-UGaCGCGGUaCGACGGCGCa----CGGG- -5'
28033 5' -60.3 NC_005887.1 + 36922 0.72 0.150018
Target:  5'- cGGGCgcguggucGCGCCGgucGCUGCgGCGccGCCCg -3'
miRNA:   3'- -UCUGa-------CGCGGUa--CGACGgCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 26582 0.7 0.181408
Target:  5'- --uCUGCGCCuucGCgGCCGCG-GCCUu -3'
miRNA:   3'- ucuGACGCGGua-CGaCGGCGCaCGGG- -5'
28033 5' -60.3 NC_005887.1 + 39444 0.7 0.186341
Target:  5'- cGGCgGCGUCGUucGCggcgGCCGaCGUGUCCg -3'
miRNA:   3'- uCUGaCGCGGUA--CGa---CGGC-GCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 18097 0.7 0.186341
Target:  5'- cGACU-CGCCGuggcUGCUGCCGgcaCGUGgCCa -3'
miRNA:   3'- uCUGAcGCGGU----ACGACGGC---GCACgGG- -5'
28033 5' -60.3 NC_005887.1 + 24194 0.7 0.191392
Target:  5'- -cACaGCGUCGUGUUGCCGaCGUGCg- -3'
miRNA:   3'- ucUGaCGCGGUACGACGGC-GCACGgg -5'
28033 5' -60.3 NC_005887.1 + 19097 0.7 0.20239
Target:  5'- -aGCUGCGCCuuuUGCgcgccgaccgccgccGCuCGCGUGCCg -3'
miRNA:   3'- ucUGACGCGGu--ACGa--------------CG-GCGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 41932 0.7 0.20727
Target:  5'- cGGCUcGCaGCUGaGCUGCCcgGCGUGCUCg -3'
miRNA:   3'- uCUGA-CG-CGGUaCGACGG--CGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 14643 0.69 0.21281
Target:  5'- cGGCagccgGCGCgGUGCUGCC-CGUcGCCg -3'
miRNA:   3'- uCUGa----CGCGgUACGACGGcGCA-CGGg -5'
28033 5' -60.3 NC_005887.1 + 1819 0.69 0.21281
Target:  5'- cAGAC--CGUCGUcGCUGCCGCGcGCCg -3'
miRNA:   3'- -UCUGacGCGGUA-CGACGGCGCaCGGg -5'
28033 5' -60.3 NC_005887.1 + 40434 0.69 0.218477
Target:  5'- uGAC-GcCGCCcgGCUGCCgaaagaacGCGUaGCCCu -3'
miRNA:   3'- uCUGaC-GCGGuaCGACGG--------CGCA-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 22776 0.69 0.224273
Target:  5'- cGACaGCGUgAcGCUGCuCGaCGUGCCUg -3'
miRNA:   3'- uCUGaCGCGgUaCGACG-GC-GCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 27340 0.68 0.248771
Target:  5'- cGACUGCGCCAcGCgcaGCgGCGcGCa- -3'
miRNA:   3'- uCUGACGCGGUaCGa--CGgCGCaCGgg -5'
28033 5' -60.3 NC_005887.1 + 40147 0.68 0.248771
Target:  5'- -cGCUgcGCGCCGcGCUcGCCGCGUGUg- -3'
miRNA:   3'- ucUGA--CGCGGUaCGA-CGGCGCACGgg -5'
28033 5' -60.3 NC_005887.1 + 14891 0.68 0.261829
Target:  5'- cAGAaUGCGCCA-GCUGCUaCgGUGCCg -3'
miRNA:   3'- -UCUgACGCGGUaCGACGGcG-CACGGg -5'
28033 5' -60.3 NC_005887.1 + 8479 0.68 0.261829
Target:  5'- cGACggaGCGCUGUcgGCUGCCGCaG-GCUCg -3'
miRNA:   3'- uCUGa--CGCGGUA--CGACGGCG-CaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.