Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28033 | 5' | -60.3 | NC_005887.1 | + | 361 | 0.66 | 0.343678 |
Target: 5'- uGGGCcGCagGCCGUGCUGCUgauaggcgaGCGcGCCg -3' miRNA: 3'- -UCUGaCG--CGGUACGACGG---------CGCaCGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 395 | 0.66 | 0.335527 |
Target: 5'- aAGACgggcaaGCGCCGcgaagacGC-GCCGCGccGCCCg -3' miRNA: 3'- -UCUGa-----CGCGGUa------CGaCGGCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 744 | 0.66 | 0.377689 |
Target: 5'- cGGGCcGCGCCG-GCcGCCGCaccuggGCCg -3' miRNA: 3'- -UCUGaCGCGGUaCGaCGGCGca----CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 828 | 0.66 | 0.385648 |
Target: 5'- -uGCUcGCGCgAUcGCgGCCGCGaagaaagccaaggUGCCCg -3' miRNA: 3'- ucUGA-CGCGgUA-CGaCGGCGC-------------ACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 1819 | 0.69 | 0.21281 |
Target: 5'- cAGAC--CGUCGUcGCUGCCGCGcGCCg -3' miRNA: 3'- -UCUGacGCGGUA-CGACGGCGCaCGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6410 | 0.67 | 0.296907 |
Target: 5'- cGACUGCGUgAUcaucGCCGUGUGgCCg -3' miRNA: 3'- uCUGACGCGgUAcga-CGGCGCACgGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6631 | 0.66 | 0.377689 |
Target: 5'- cGACcGCGaCCGaGCUGCaCGCGUGgauCUCg -3' miRNA: 3'- uCUGaCGC-GGUaCGACG-GCGCAC---GGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 6765 | 0.68 | 0.27544 |
Target: 5'- aAGuuCUGCaagGCCAag--GCCGUGUGCCCg -3' miRNA: 3'- -UCu-GACG---CGGUacgaCGGCGCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 8479 | 0.68 | 0.261829 |
Target: 5'- cGACggaGCGCUGUcgGCUGCCGCaG-GCUCg -3' miRNA: 3'- uCUGa--CGCGGUA--CGACGGCG-CaCGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 11131 | 0.72 | 0.13814 |
Target: 5'- cGAUcGCGUCGUGCUGaagcaCGCGgcGCCCg -3' miRNA: 3'- uCUGaCGCGGUACGACg----GCGCa-CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 13081 | 0.68 | 0.268565 |
Target: 5'- uGGAacgcgGCGCUcgaucgcggaGUGCUGCaggGCGUGCCg -3' miRNA: 3'- -UCUga---CGCGG----------UACGACGg--CGCACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 13953 | 0.66 | 0.35197 |
Target: 5'- cGGCUGCGaCGUGCgcgugacgacaGCCGCGaaGCCg -3' miRNA: 3'- uCUGACGCgGUACGa----------CGGCGCa-CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 14643 | 0.69 | 0.21281 |
Target: 5'- cGGCagccgGCGCgGUGCUGCC-CGUcGCCg -3' miRNA: 3'- uCUGa----CGCGgUACGACGGcGCA-CGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 14891 | 0.68 | 0.261829 |
Target: 5'- cAGAaUGCGCCA-GCUGCUaCgGUGCCg -3' miRNA: 3'- -UCUgACGCGGUaCGACGGcG-CACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 15110 | 0.68 | 0.282455 |
Target: 5'- cGGC-GCGCgAUGCaguugcGCCGCGaugcGCCCg -3' miRNA: 3'- uCUGaCGCGgUACGa-----CGGCGCa---CGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 16855 | 0.67 | 0.296171 |
Target: 5'- -cGCcGCGCCAUcguccgaGCcGCCGCugcguuGUGCCCa -3' miRNA: 3'- ucUGaCGCGGUA-------CGaCGGCG------CACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 17891 | 0.75 | 0.090764 |
Target: 5'- cGGCcGCGCCAacgGCcugaUGCUGCGUGUCCu -3' miRNA: 3'- uCUGaCGCGGUa--CG----ACGGCGCACGGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 18097 | 0.7 | 0.186341 |
Target: 5'- cGACU-CGCCGuggcUGCUGCCGgcaCGUGgCCa -3' miRNA: 3'- uCUGAcGCGGU----ACGACGGC---GCACgGG- -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 18931 | 0.66 | 0.357014 |
Target: 5'- cGGCUGCGacgagcugaucgaCGcGCUGCUGCGgcUGCCa -3' miRNA: 3'- uCUGACGCg------------GUaCGACGGCGC--ACGGg -5' |
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28033 | 5' | -60.3 | NC_005887.1 | + | 19097 | 0.7 | 0.20239 |
Target: 5'- -aGCUGCGCCuuuUGCgcgccgaccgccgccGCuCGCGUGCCg -3' miRNA: 3'- ucUGACGCGGu--ACGa--------------CG-GCGCACGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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