miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28033 5' -60.3 NC_005887.1 + 361 0.66 0.343678
Target:  5'- uGGGCcGCagGCCGUGCUGCUgauaggcgaGCGcGCCg -3'
miRNA:   3'- -UCUGaCG--CGGUACGACGG---------CGCaCGGg -5'
28033 5' -60.3 NC_005887.1 + 395 0.66 0.335527
Target:  5'- aAGACgggcaaGCGCCGcgaagacGC-GCCGCGccGCCCg -3'
miRNA:   3'- -UCUGa-----CGCGGUa------CGaCGGCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 744 0.66 0.377689
Target:  5'- cGGGCcGCGCCG-GCcGCCGCaccuggGCCg -3'
miRNA:   3'- -UCUGaCGCGGUaCGaCGGCGca----CGGg -5'
28033 5' -60.3 NC_005887.1 + 828 0.66 0.385648
Target:  5'- -uGCUcGCGCgAUcGCgGCCGCGaagaaagccaaggUGCCCg -3'
miRNA:   3'- ucUGA-CGCGgUA-CGaCGGCGC-------------ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 1819 0.69 0.21281
Target:  5'- cAGAC--CGUCGUcGCUGCCGCGcGCCg -3'
miRNA:   3'- -UCUGacGCGGUA-CGACGGCGCaCGGg -5'
28033 5' -60.3 NC_005887.1 + 6410 0.67 0.296907
Target:  5'- cGACUGCGUgAUcaucGCCGUGUGgCCg -3'
miRNA:   3'- uCUGACGCGgUAcga-CGGCGCACgGG- -5'
28033 5' -60.3 NC_005887.1 + 6631 0.66 0.377689
Target:  5'- cGACcGCGaCCGaGCUGCaCGCGUGgauCUCg -3'
miRNA:   3'- uCUGaCGC-GGUaCGACG-GCGCAC---GGG- -5'
28033 5' -60.3 NC_005887.1 + 6765 0.68 0.27544
Target:  5'- aAGuuCUGCaagGCCAag--GCCGUGUGCCCg -3'
miRNA:   3'- -UCu-GACG---CGGUacgaCGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 8479 0.68 0.261829
Target:  5'- cGACggaGCGCUGUcgGCUGCCGCaG-GCUCg -3'
miRNA:   3'- uCUGa--CGCGGUA--CGACGGCG-CaCGGG- -5'
28033 5' -60.3 NC_005887.1 + 11131 0.72 0.13814
Target:  5'- cGAUcGCGUCGUGCUGaagcaCGCGgcGCCCg -3'
miRNA:   3'- uCUGaCGCGGUACGACg----GCGCa-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 13081 0.68 0.268565
Target:  5'- uGGAacgcgGCGCUcgaucgcggaGUGCUGCaggGCGUGCCg -3'
miRNA:   3'- -UCUga---CGCGG----------UACGACGg--CGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 13953 0.66 0.35197
Target:  5'- cGGCUGCGaCGUGCgcgugacgacaGCCGCGaaGCCg -3'
miRNA:   3'- uCUGACGCgGUACGa----------CGGCGCa-CGGg -5'
28033 5' -60.3 NC_005887.1 + 14643 0.69 0.21281
Target:  5'- cGGCagccgGCGCgGUGCUGCC-CGUcGCCg -3'
miRNA:   3'- uCUGa----CGCGgUACGACGGcGCA-CGGg -5'
28033 5' -60.3 NC_005887.1 + 14891 0.68 0.261829
Target:  5'- cAGAaUGCGCCA-GCUGCUaCgGUGCCg -3'
miRNA:   3'- -UCUgACGCGGUaCGACGGcG-CACGGg -5'
28033 5' -60.3 NC_005887.1 + 15110 0.68 0.282455
Target:  5'- cGGC-GCGCgAUGCaguugcGCCGCGaugcGCCCg -3'
miRNA:   3'- uCUGaCGCGgUACGa-----CGGCGCa---CGGG- -5'
28033 5' -60.3 NC_005887.1 + 16855 0.67 0.296171
Target:  5'- -cGCcGCGCCAUcguccgaGCcGCCGCugcguuGUGCCCa -3'
miRNA:   3'- ucUGaCGCGGUA-------CGaCGGCG------CACGGG- -5'
28033 5' -60.3 NC_005887.1 + 17891 0.75 0.090764
Target:  5'- cGGCcGCGCCAacgGCcugaUGCUGCGUGUCCu -3'
miRNA:   3'- uCUGaCGCGGUa--CG----ACGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 18097 0.7 0.186341
Target:  5'- cGACU-CGCCGuggcUGCUGCCGgcaCGUGgCCa -3'
miRNA:   3'- uCUGAcGCGGU----ACGACGGC---GCACgGG- -5'
28033 5' -60.3 NC_005887.1 + 18931 0.66 0.357014
Target:  5'- cGGCUGCGacgagcugaucgaCGcGCUGCUGCGgcUGCCa -3'
miRNA:   3'- uCUGACGCg------------GUaCGACGGCGC--ACGGg -5'
28033 5' -60.3 NC_005887.1 + 19097 0.7 0.20239
Target:  5'- -aGCUGCGCCuuuUGCgcgccgaccgccgccGCuCGCGUGCCg -3'
miRNA:   3'- ucUGACGCGGu--ACGa--------------CG-GCGCACGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.