miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28033 5' -60.3 NC_005887.1 + 34365 0.67 0.311928
Target:  5'- gAGACgaGCGCCccgcguaucagaGUGCgGCCGgGcgcgagGCCCg -3'
miRNA:   3'- -UCUGa-CGCGG------------UACGaCGGCgCa-----CGGG- -5'
28033 5' -60.3 NC_005887.1 + 31191 0.67 0.304347
Target:  5'- cGGGCaUGCGCgCGUagauuucggGC-GCCGCGUGCUUc -3'
miRNA:   3'- -UCUG-ACGCG-GUA---------CGaCGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 29643 0.67 0.304346
Target:  5'- -uGCUGCGCgAccaGCgUGCgCGCGUGaCCCu -3'
miRNA:   3'- ucUGACGCGgUa--CG-ACG-GCGCAC-GGG- -5'
28033 5' -60.3 NC_005887.1 + 6410 0.67 0.296907
Target:  5'- cGACUGCGUgAUcaucGCCGUGUGgCCg -3'
miRNA:   3'- uCUGACGCGgUAcga-CGGCGCACgGG- -5'
28033 5' -60.3 NC_005887.1 + 38487 0.67 0.296907
Target:  5'- cGGGCUGcCGCCGUacacaucgucGgUGCCGaCGUagaagcGCCCg -3'
miRNA:   3'- -UCUGAC-GCGGUA----------CgACGGC-GCA------CGGG- -5'
28033 5' -60.3 NC_005887.1 + 16855 0.67 0.296171
Target:  5'- -cGCcGCGCCAUcguccgaGCcGCCGCugcguuGUGCCCa -3'
miRNA:   3'- ucUGaCGCGGUA-------CGaCGGCG------CACGGG- -5'
28033 5' -60.3 NC_005887.1 + 21275 0.67 0.28961
Target:  5'- cGGCgGCGgCGUaugcGCUGCUGgCGUcGCCCa -3'
miRNA:   3'- uCUGaCGCgGUA----CGACGGC-GCA-CGGG- -5'
28033 5' -60.3 NC_005887.1 + 36839 0.67 0.28961
Target:  5'- -uGCUGCgGCCgGUGCUGCgGCcgGUGCUg -3'
miRNA:   3'- ucUGACG-CGG-UACGACGgCG--CACGGg -5'
28033 5' -60.3 NC_005887.1 + 26397 0.67 0.28961
Target:  5'- cGACaGCGgCGUGC-GgCGCGUGgCCg -3'
miRNA:   3'- uCUGaCGCgGUACGaCgGCGCACgGG- -5'
28033 5' -60.3 NC_005887.1 + 15110 0.68 0.282455
Target:  5'- cGGC-GCGCgAUGCaguugcGCCGCGaugcGCCCg -3'
miRNA:   3'- uCUGaCGCGgUACGa-----CGGCGCa---CGGG- -5'
28033 5' -60.3 NC_005887.1 + 35863 0.68 0.282455
Target:  5'- cGGAUUGCGCUcgGCagacaCCGCGacgccgcGCCCg -3'
miRNA:   3'- -UCUGACGCGGuaCGac---GGCGCa------CGGG- -5'
28033 5' -60.3 NC_005887.1 + 28322 0.68 0.282455
Target:  5'- cAGGCUGCGCCGgcgGCgcgccggcgGuuGCGgagGCgCg -3'
miRNA:   3'- -UCUGACGCGGUa--CGa--------CggCGCa--CGgG- -5'
28033 5' -60.3 NC_005887.1 + 35891 0.68 0.278229
Target:  5'- cGAuCUGCGCCcgGuCuucggacagacggaaUGCCGCGUGUugCCg -3'
miRNA:   3'- uCU-GACGCGGuaC-G---------------ACGGCGCACG--GG- -5'
28033 5' -60.3 NC_005887.1 + 6765 0.68 0.27544
Target:  5'- aAGuuCUGCaagGCCAag--GCCGUGUGCCCg -3'
miRNA:   3'- -UCu-GACG---CGGUacgaCGGCGCACGGG- -5'
28033 5' -60.3 NC_005887.1 + 22540 0.68 0.274746
Target:  5'- -cGCUGCG-CAUGCcGuCCGCGaucgacaUGCCCg -3'
miRNA:   3'- ucUGACGCgGUACGaC-GGCGC-------ACGGG- -5'
28033 5' -60.3 NC_005887.1 + 13081 0.68 0.268565
Target:  5'- uGGAacgcgGCGCUcgaucgcggaGUGCUGCaggGCGUGCCg -3'
miRNA:   3'- -UCUga---CGCGG----------UACGACGg--CGCACGGg -5'
28033 5' -60.3 NC_005887.1 + 14891 0.68 0.261829
Target:  5'- cAGAaUGCGCCA-GCUGCUaCgGUGCCg -3'
miRNA:   3'- -UCUgACGCGGUaCGACGGcG-CACGGg -5'
28033 5' -60.3 NC_005887.1 + 33944 0.68 0.261829
Target:  5'- cGACgGCGCUcgGCgagcacGUCGCGUGCg- -3'
miRNA:   3'- uCUGaCGCGGuaCGa-----CGGCGCACGgg -5'
28033 5' -60.3 NC_005887.1 + 8479 0.68 0.261829
Target:  5'- cGACggaGCGCUGUcgGCUGCCGCaG-GCUCg -3'
miRNA:   3'- uCUGa--CGCGGUA--CGACGGCG-CaCGGG- -5'
28033 5' -60.3 NC_005887.1 + 40147 0.68 0.248771
Target:  5'- -cGCUgcGCGCCGcGCUcGCCGCGUGUg- -3'
miRNA:   3'- ucUGA--CGCGGUaCGA-CGGCGCACGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.