Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 1462 | 0.66 | 0.770135 |
|
Target: 5'- uGUGcGAGCAg-GAGCCCGacgccgacgGCGUGCGg -3' miRNA: 3'- -CAC-CUCGUagCUUGGGCca-------UGCAUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 2486 | 0.66 | 0.759608 |
|
Target: 5'- -cGGAuCAUCGAcggcgaGCCCGGccugcuCGUGCAc -3' miRNA: 3'- caCCUcGUAGCU------UGGGCCau----GCAUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 18385 | 0.66 | 0.759608 |
|
Target: 5'- --cGAGCAgUGGGCCgaggucguCGGUGCGUGCGc -3' miRNA: 3'- cacCUCGUaGCUUGG--------GCCAUGCAUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 42093 | 0.66 | 0.748941 |
|
Target: 5'- cGUGGGGCG-CGAugCCGcGUcgACGaACGa -3' miRNA: 3'- -CACCUCGUaGCUugGGC-CA--UGCaUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 5897 | 0.66 | 0.738148 |
|
Target: 5'- -cGGAaCGUCGAGCUCGGUcgccagGCGaUGCGc -3' miRNA: 3'- caCCUcGUAGCUUGGGCCA------UGC-AUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 1407 | 0.66 | 0.734887 |
|
Target: 5'- gGUcGAGCAUgcgcucggcguugcCGAACUCGGUGCGcGCGc -3' miRNA: 3'- -CAcCUCGUA--------------GCUUGGGCCAUGCaUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 11098 | 0.67 | 0.671433 |
|
Target: 5'- cGUGGcGCAUCGG--CUGGUGCGcGCGa -3' miRNA: 3'- -CACCuCGUAGCUugGGCCAUGCaUGU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 40990 | 0.68 | 0.648748 |
|
Target: 5'- cGUGcccGAGC-UCGaAGCCUGGUACGUGu- -3' miRNA: 3'- -CAC---CUCGuAGC-UUGGGCCAUGCAUgu -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 11007 | 0.69 | 0.558205 |
|
Target: 5'- cGUGGGcCAUCGAcgacgGCCCGGUcggcACGUGgGa -3' miRNA: 3'- -CACCUcGUAGCU-----UGGGCCA----UGCAUgU- -5' |
|||||||
| 28034 | 3' | -53.1 | NC_005887.1 | + | 23116 | 0.97 | 0.008108 |
|
Target: 5'- gGUGGAGCAUCGAACCCGGUGCaUACAc -3' miRNA: 3'- -CACCUCGUAGCUUGGGCCAUGcAUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home