Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28034 | 5' | -57.8 | NC_005887.1 | + | 31915 | 0.66 | 0.503728 |
Target: 5'- --gGUGcACUGCGCCGUCgGUCagaCCGCg -3' miRNA: 3'- cagCAU-UGGCGCGGCGGaCAGa--GGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 39468 | 0.66 | 0.493316 |
Target: 5'- -aCGUGuCCGuCGUCGCCUGcgcguuaUCCACc -3' miRNA: 3'- caGCAUuGGC-GCGGCGGACag-----AGGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 28120 | 0.66 | 0.487117 |
Target: 5'- aUCGgauGCCgcgccgaacagcgcgGCGCCGcCCUGUCcgaggCCGCg -3' miRNA: 3'- cAGCau-UGG---------------CGCGGC-GGACAGa----GGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 36290 | 0.66 | 0.483004 |
Target: 5'- uUCGUuggugaguGCCGCGCCGCUg----CCACc -3' miRNA: 3'- cAGCAu-------UGGCGCGGCGGacagaGGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 41457 | 0.66 | 0.483004 |
Target: 5'- aUCGaAGCCGagGCCGCCUGaCUCguCc -3' miRNA: 3'- cAGCaUUGGCg-CGGCGGACaGAGguG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 3238 | 0.66 | 0.4627 |
Target: 5'- uUCGauucGACCGCGCCGCUcGcgCUgCGCa -3' miRNA: 3'- cAGCa---UUGGCGCGGCGGaCa-GAgGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 14495 | 0.67 | 0.452717 |
Target: 5'- aUCGUGcccGCCGCGgUGCUUGguggUCCGCu -3' miRNA: 3'- cAGCAU---UGGCGCgGCGGACag--AGGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 12961 | 0.67 | 0.452717 |
Target: 5'- aUCGcGACCGCGCCGCaUGgg-CCGa -3' miRNA: 3'- cAGCaUUGGCGCGGCGgACagaGGUg -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 40357 | 0.67 | 0.442853 |
Target: 5'- cGUCGagcgcGGCCGUGCCGCUcGUCg-CGCg -3' miRNA: 3'- -CAGCa----UUGGCGCGGCGGaCAGagGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 874 | 0.67 | 0.408379 |
Target: 5'- -gCGUGGcCCGCGCCGCCggacgagucaggcgGcCUCgGCu -3' miRNA: 3'- caGCAUU-GGCGCGGCGGa-------------CaGAGgUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 39641 | 0.67 | 0.404653 |
Target: 5'- cGUCGUcgcgcggcucGGCCGCuuGCCGCCcGUacgCUUCACg -3' miRNA: 3'- -CAGCA----------UUGGCG--CGGCGGaCA---GAGGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 8525 | 0.67 | 0.404653 |
Target: 5'- uUCGaucGCCGCGCCGaCCUGacacCCGCg -3' miRNA: 3'- cAGCau-UGGCGCGGC-GGACaga-GGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 6934 | 0.68 | 0.395433 |
Target: 5'- cUCGgcaugGGCCGCGCCGUCUGgua-CAUg -3' miRNA: 3'- cAGCa----UUGGCGCGGCGGACagagGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 34889 | 0.68 | 0.386349 |
Target: 5'- uGUCGU--UCGCGCUGCCcuUCUCgACg -3' miRNA: 3'- -CAGCAuuGGCGCGGCGGacAGAGgUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 5133 | 0.7 | 0.295842 |
Target: 5'- cUCGgcaUGACCGCGCUGCCcgacGUCggcgcgCCGCu -3' miRNA: 3'- cAGC---AUUGGCGCGGCGGa---CAGa-----GGUG- -5' |
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28034 | 5' | -57.8 | NC_005887.1 | + | 23150 | 1.1 | 0.000327 |
Target: 5'- cGUCGUAACCGCGCCGCCUGUCUCCACg -3' miRNA: 3'- -CAGCAUUGGCGCGGCGGACAGAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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