Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28035 | 3' | -56 | NC_005887.1 | + | 22863 | 0.69 | 0.390128 |
Target: 5'- aUCGacgGCCGCCGGccGCuAUCAGAUCCu -3' miRNA: 3'- cAGCa--CGGCGGUUa-CG-UGGUCUAGGc -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 24018 | 0.72 | 0.255087 |
Target: 5'- cGUCGcaUGUCGCCGAUGCGCCcccagugccgcgAGAUCa- -3' miRNA: 3'- -CAGC--ACGGCGGUUACGUGG------------UCUAGgc -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 24485 | 0.72 | 0.280828 |
Target: 5'- aUCGUGUCGUCGAUGCccggcaggaucuucGCCAGuUCCu -3' miRNA: 3'- cAGCACGGCGGUUACG--------------UGGUCuAGGc -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 25313 | 0.71 | 0.321229 |
Target: 5'- -gCGUGCCGCUgc-GCAUCcGAUCCGu -3' miRNA: 3'- caGCACGGCGGuuaCGUGGuCUAGGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 27195 | 0.66 | 0.557505 |
Target: 5'- uUCGccaUGCCGUCGA-GCGCCugcauggggucggucGGGUCCGu -3' miRNA: 3'- cAGC---ACGGCGGUUaCGUGG---------------UCUAGGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 27542 | 0.71 | 0.305491 |
Target: 5'- cGUCGcgGCCGCCAGauUG-AUCGGGUCCa -3' miRNA: 3'- -CAGCa-CGGCGGUU--ACgUGGUCUAGGc -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 31896 | 0.69 | 0.418341 |
Target: 5'- cGUCG-GCCaGCCGGucaggcaugcUGCugCaAGAUCCGg -3' miRNA: 3'- -CAGCaCGG-CGGUU----------ACGugG-UCUAGGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 31984 | 0.67 | 0.520513 |
Target: 5'- cGUCG-GCaCGCCGuUGUACguGAUaCCGg -3' miRNA: 3'- -CAGCaCG-GCGGUuACGUGguCUA-GGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 32453 | 0.85 | 0.033236 |
Target: 5'- aUCGUGCCGCCGAccUGCACCggcuGGAUCCu -3' miRNA: 3'- cAGCACGGCGGUU--ACGUGG----UCUAGGc -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 34643 | 0.67 | 0.542169 |
Target: 5'- cGUCGacgagGCgCGCCGGcuUGCcgguuuCCGGAUCCGc -3' miRNA: 3'- -CAGCa----CG-GCGGUU--ACGu-----GGUCUAGGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 34850 | 0.66 | 0.607504 |
Target: 5'- gGUCGUGCCGCCGaggGUGUaguucaaGCgCAGGUagCGc -3' miRNA: 3'- -CAGCACGGCGGU---UACG-------UG-GUCUAg-GC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 36832 | 0.66 | 0.552013 |
Target: 5'- -gCGUGCCugcugcgGCCGGUGCugCGG--CCGg -3' miRNA: 3'- caGCACGG-------CGGUUACGugGUCuaGGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 38870 | 0.68 | 0.457819 |
Target: 5'- cGUCGUGCuCGaucauCAGcGCGCCAGGcCCGa -3' miRNA: 3'- -CAGCACG-GCg----GUUaCGUGGUCUaGGC- -5' |
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28035 | 3' | -56 | NC_005887.1 | + | 40523 | 0.74 | 0.195147 |
Target: 5'- uUCGUGUCGCCGAagaUGCcguACCAGGUCgGc -3' miRNA: 3'- cAGCACGGCGGUU---ACG---UGGUCUAGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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