miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28035 5' -53.1 NC_005887.1 + 26357 0.66 0.759677
Target:  5'- cGCGGcGGGUCugcGCGCgcacgacauccucgaCGAACUGCGa -3'
miRNA:   3'- aUGCC-CCUAG---UGCGaua------------GCUUGACGU- -5'
28035 5' -53.1 NC_005887.1 + 33821 0.66 0.756459
Target:  5'- cGCGGGugucaGGUCgGCGCggcgAUCGAACgcaUGCAg -3'
miRNA:   3'- aUGCCC-----CUAG-UGCGa---UAGCUUG---ACGU- -5'
28035 5' -53.1 NC_005887.1 + 18838 0.66 0.745644
Target:  5'- -cCGGGGGUCACGCag-CGAAauaUGa- -3'
miRNA:   3'- auGCCCCUAGUGCGauaGCUUg--ACgu -5'
28035 5' -53.1 NC_005887.1 + 36920 0.66 0.72365
Target:  5'- aGCGGGcgcguGGUCGCGCcgGUC--GCUGCGg -3'
miRNA:   3'- aUGCCC-----CUAGUGCGa-UAGcuUGACGU- -5'
28035 5' -53.1 NC_005887.1 + 37383 0.66 0.72365
Target:  5'- -uCGGGGGccucguccuUCAgGgaGUUGAGCUGCGc -3'
miRNA:   3'- auGCCCCU---------AGUgCgaUAGCUUGACGU- -5'
28035 5' -53.1 NC_005887.1 + 11565 0.67 0.678573
Target:  5'- cGCGGcGGUCGCGgaAUCGGGCUuCAa -3'
miRNA:   3'- aUGCCcCUAGUGCgaUAGCUUGAcGU- -5'
28035 5' -53.1 NC_005887.1 + 23728 0.67 0.667153
Target:  5'- aGCGGGccgccGAUCGCGCUGcCGAGCa--- -3'
miRNA:   3'- aUGCCC-----CUAGUGCGAUaGCUUGacgu -5'
28035 5' -53.1 NC_005887.1 + 22652 1.07 0.001415
Target:  5'- cUACGGGGAUCACGCUAUCGAACUGCAg -3'
miRNA:   3'- -AUGCCCCUAGUGCGAUAGCUUGACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.