miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28036 3' -61.1 NC_005887.1 + 1616 0.66 0.385453
Target:  5'- aUCGCCUCgACGCgGGCGgCGACcuCGAa -3'
miRNA:   3'- -GGUGGGG-UGUGgCCGCgGCUGcuGCU- -5'
28036 3' -61.1 NC_005887.1 + 36876 0.66 0.385453
Target:  5'- gCUGCgCCAUcgGCCuGCGUCGugGugGAu -3'
miRNA:   3'- -GGUGgGGUG--UGGcCGCGGCugCugCU- -5'
28036 3' -61.1 NC_005887.1 + 14069 0.66 0.385453
Target:  5'- gCugCgCGCGCuCGGCguGCCGAUGAUGc -3'
miRNA:   3'- gGugGgGUGUG-GCCG--CGGCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 2857 0.66 0.380305
Target:  5'- aCAUCCCaAUGCCGcaggcgguggauaacGCGCaGGCGACGAc -3'
miRNA:   3'- gGUGGGG-UGUGGC---------------CGCGgCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 31961 0.66 0.376898
Target:  5'- -uGCCCgAgGCCGGCgauaGUCGACGuCGGc -3'
miRNA:   3'- ggUGGGgUgUGGCCG----CGGCUGCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 36935 0.66 0.376898
Target:  5'- gCGCCggUCGCugCGGCGCCGccCGcCGGu -3'
miRNA:   3'- gGUGG--GGUGugGCCGCGGCu-GCuGCU- -5'
28036 3' -61.1 NC_005887.1 + 26642 0.66 0.374356
Target:  5'- gCUcCUUCACGCCGGCggcggaaucauccgGCCGcGCGGCGGu -3'
miRNA:   3'- -GGuGGGGUGUGGCCG--------------CGGC-UGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 23172 0.66 0.371826
Target:  5'- uCCACgCCCGCGCCgcucacggaauaaucGGUGCCGAguaccagcggugUGAgGAc -3'
miRNA:   3'- -GGUG-GGGUGUGG---------------CCGCGGCU------------GCUgCU- -5'
28036 3' -61.1 NC_005887.1 + 36524 0.66 0.368471
Target:  5'- uUCGCCCUucGCgACCcGCGCCGACu-CGAu -3'
miRNA:   3'- -GGUGGGG--UG-UGGcCGCGGCUGcuGCU- -5'
28036 3' -61.1 NC_005887.1 + 24581 0.66 0.368471
Target:  5'- -aGCUUCACACCuGCGCauggguucgCGGCGAUGAu -3'
miRNA:   3'- ggUGGGGUGUGGcCGCG---------GCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 31504 0.66 0.368471
Target:  5'- -uGCCgCGCGCgCGGCGCgGAUGaACGc -3'
miRNA:   3'- ggUGGgGUGUG-GCCGCGgCUGC-UGCu -5'
28036 3' -61.1 NC_005887.1 + 37823 0.66 0.368471
Target:  5'- aUCGCCUCG-ACCGGgacgcCGCCGuaguCGGCGAg -3'
miRNA:   3'- -GGUGGGGUgUGGCC-----GCGGCu---GCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 24773 0.66 0.365969
Target:  5'- uCCAgaUCCCACGuCCGGUaguagauugugcugGCCGACaGCGGc -3'
miRNA:   3'- -GGU--GGGGUGU-GGCCG--------------CGGCUGcUGCU- -5'
28036 3' -61.1 NC_005887.1 + 6798 0.66 0.365969
Target:  5'- cUCGCCgCACAugucgagcagaccaUCGGCGCUGACuuCGAa -3'
miRNA:   3'- -GGUGGgGUGU--------------GGCCGCGGCUGcuGCU- -5'
28036 3' -61.1 NC_005887.1 + 8397 0.67 0.360175
Target:  5'- aCGCCgCACgcgacgugcucGCCGaGCGCCGuCGGCa- -3'
miRNA:   3'- gGUGGgGUG-----------UGGC-CGCGGCuGCUGcu -5'
28036 3' -61.1 NC_005887.1 + 26124 0.67 0.360175
Target:  5'- uCCugCaCgGCGCgcuucguuucgCGGCGCuCGACGACGu -3'
miRNA:   3'- -GGugG-GgUGUG-----------GCCGCG-GCUGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 19253 0.67 0.360175
Target:  5'- uCCACCuguaCCGC-UUGGUGCCGcCGACGc -3'
miRNA:   3'- -GGUGG----GGUGuGGCCGCGGCuGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 21402 0.67 0.357712
Target:  5'- aCCGCCggcauucgguaacaCCACACCuGcCGCuguuuCGGCGACGAc -3'
miRNA:   3'- -GGUGG--------------GGUGUGGcC-GCG-----GCUGCUGCU- -5'
28036 3' -61.1 NC_005887.1 + 1219 0.67 0.35201
Target:  5'- aUCACCUuauCugGCgGGCGCUGcGCGGCGc -3'
miRNA:   3'- -GGUGGG---GugUGgCCGCGGC-UGCUGCu -5'
28036 3' -61.1 NC_005887.1 + 20969 0.67 0.35201
Target:  5'- --uUCCCGCGCUGGCGCUuGGCGccACGc -3'
miRNA:   3'- gguGGGGUGUGGCCGCGG-CUGC--UGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.