miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28037 3' -62.1 NC_005887.1 + 15092 0.67 0.245197
Target:  5'- aUCaUUGGCgacgcgGGCCGGCGcgcgaugcaGUUGCGCCg -3'
miRNA:   3'- aAG-GGCCG------UCGGCCGCag-------CAACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 15499 0.66 0.292018
Target:  5'- -gCCCGGCGGCaaCGGCuacCGgcagacGCGCCc -3'
miRNA:   3'- aaGGGCCGUCG--GCCGca-GCaa----CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 15926 0.7 0.1614
Target:  5'- gUUCCGcGCGGgCCGGaaUCGaUGCGCCg -3'
miRNA:   3'- aAGGGC-CGUC-GGCCgcAGCaACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 17332 0.68 0.204779
Target:  5'- --aCCGGCuGGCCGGCGgcCGccgGCGCg -3'
miRNA:   3'- aagGGCCG-UCGGCCGCa-GCaa-CGCGg -5'
28037 3' -62.1 NC_005887.1 + 20544 0.73 0.093317
Target:  5'- -gCCCGGCAGCgccgCGGaCGUCGUguUGaUGCCg -3'
miRNA:   3'- aaGGGCCGUCG----GCC-GCAGCA--AC-GCGG- -5'
28037 3' -62.1 NC_005887.1 + 20779 0.72 0.113314
Target:  5'- aUgCCGGCAGUacuggaUGGCGUaaUUGCGCCg -3'
miRNA:   3'- aAgGGCCGUCG------GCCGCAgcAACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 20832 1.09 0.000142
Target:  5'- uUUCCCGGCAGCCGGCGUCGUUGCGCCg -3'
miRNA:   3'- -AAGGGCCGUCGGCCGCAGCAACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 21271 0.67 0.264456
Target:  5'- -aCCgCGGCGG-CGGCGUa--UGCGCUg -3'
miRNA:   3'- aaGG-GCCGUCgGCCGCAgcaACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 22966 0.66 0.284923
Target:  5'- cUCUgCGGCAGCUgcgcgagcauGGCG-CGUUGcCGCUg -3'
miRNA:   3'- aAGG-GCCGUCGG----------CCGCaGCAAC-GCGG- -5'
28037 3' -62.1 NC_005887.1 + 23472 0.75 0.066601
Target:  5'- -gCCCGGCAGCCGGCGaCGcccuugaucUGCuuGCCg -3'
miRNA:   3'- aaGGGCCGUCGGCCGCaGCa--------ACG--CGG- -5'
28037 3' -62.1 NC_005887.1 + 25224 0.66 0.291303
Target:  5'- -cCuuGcGUAGCuCGGCGUCGUUcagcggauucccgGCGUCg -3'
miRNA:   3'- aaGggC-CGUCG-GCCGCAGCAA-------------CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 26028 0.68 0.227117
Target:  5'- gUUCgCGGCgaccucgaacaGGCCGGCGUCc-UGCGUg -3'
miRNA:   3'- -AAGgGCCG-----------UCGGCCGCAGcaACGCGg -5'
28037 3' -62.1 NC_005887.1 + 26205 0.69 0.179555
Target:  5'- -aCUCGGCGcGCCGGUgguuggcgggGUgGUUGCGCg -3'
miRNA:   3'- aaGGGCCGU-CGGCCG----------CAgCAACGCGg -5'
28037 3' -62.1 NC_005887.1 + 26419 0.66 0.31413
Target:  5'- --gCUGGCGGCCGcGCGggaacgcgCGcUGCaGCCg -3'
miRNA:   3'- aagGGCCGUCGGC-CGCa-------GCaACG-CGG- -5'
28037 3' -62.1 NC_005887.1 + 27381 0.67 0.239041
Target:  5'- -gCCUGcGCGGCguaGGCGUCGagUUGCGgCg -3'
miRNA:   3'- aaGGGC-CGUCGg--CCGCAGC--AACGCgG- -5'
28037 3' -62.1 NC_005887.1 + 27762 0.69 0.179555
Target:  5'- aUgCCGaGCGcGCCGGCGagGUagaGCGCCa -3'
miRNA:   3'- aAgGGC-CGU-CGGCCGCagCAa--CGCGG- -5'
28037 3' -62.1 NC_005887.1 + 28030 0.68 0.2157
Target:  5'- gUUCaCCuGCuuGUCGGCGUCGgccUGCGCUu -3'
miRNA:   3'- -AAG-GGcCGu-CGGCCGCAGCa--ACGCGG- -5'
28037 3' -62.1 NC_005887.1 + 28330 0.68 0.204779
Target:  5'- --gCCGGCGgcgcGCCGGCGguugCGgagGCGCg -3'
miRNA:   3'- aagGGCCGU----CGGCCGCa---GCaa-CGCGg -5'
28037 3' -62.1 NC_005887.1 + 29030 0.69 0.179555
Target:  5'- aUCCgCGauGCGGCCGGCGUUGccgaaCGCCu -3'
miRNA:   3'- aAGG-GC--CGUCGGCCGCAGCaac--GCGG- -5'
28037 3' -62.1 NC_005887.1 + 29363 0.66 0.292018
Target:  5'- -aCCCGGCAGCCG-CGagCGgcaUGC-CCu -3'
miRNA:   3'- aaGGGCCGUCGGCcGCa-GCa--ACGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.