miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28037 5' -52.8 NC_005887.1 + 14722 0.66 0.782725
Target:  5'- cGCGGCGAUcGCGcAGGcgacGaUCGAGAAAg -3'
miRNA:   3'- -CGCCGCUA-CGC-UCUau--CcAGCUCUUU- -5'
28037 5' -52.8 NC_005887.1 + 41729 0.66 0.78169
Target:  5'- gGCGGCGAUccgaucccggcgcGCGGGcucuGGUCGaAGAc- -3'
miRNA:   3'- -CGCCGCUA-------------CGCUCuau-CCAGC-UCUuu -5'
28037 5' -52.8 NC_005887.1 + 25763 0.68 0.661551
Target:  5'- uUGGCGAuuugcaguugcuUGCGGGcccGGUCGAGAu- -3'
miRNA:   3'- cGCCGCU------------ACGCUCuauCCAGCUCUuu -5'
28037 5' -52.8 NC_005887.1 + 12445 0.68 0.650106
Target:  5'- cGCGGC-AUGUGGGAgUGGGcCGuGAAGa -3'
miRNA:   3'- -CGCCGcUACGCUCU-AUCCaGCuCUUU- -5'
28037 5' -52.8 NC_005887.1 + 5815 0.69 0.581451
Target:  5'- gGCGGCGAU-CGAGucggcgcGGGUCGcGAAGg -3'
miRNA:   3'- -CGCCGCUAcGCUCua-----UCCAGCuCUUU- -5'
28037 5' -52.8 NC_005887.1 + 1932 0.7 0.503511
Target:  5'- gGCGGCGucAUGCGuGAcggcgaucggUGGGUCGuGAAc -3'
miRNA:   3'- -CGCCGC--UACGCuCU----------AUCCAGCuCUUu -5'
28037 5' -52.8 NC_005887.1 + 24972 0.71 0.440512
Target:  5'- cGCGGCc--GCGAGGgacAGGUCGGGGu- -3'
miRNA:   3'- -CGCCGcuaCGCUCUa--UCCAGCUCUuu -5'
28037 5' -52.8 NC_005887.1 + 20866 1.08 0.001459
Target:  5'- gGCGGCGAUGCGAGAUAGGUCGAGAAAc -3'
miRNA:   3'- -CGCCGCUACGCUCUAUCCAGCUCUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.