Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 14722 | 0.66 | 0.782725 |
|
Target: 5'- cGCGGCGAUcGCGcAGGcgacGaUCGAGAAAg -3' miRNA: 3'- -CGCCGCUA-CGC-UCUau--CcAGCUCUUU- -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 41729 | 0.66 | 0.78169 |
|
Target: 5'- gGCGGCGAUccgaucccggcgcGCGGGcucuGGUCGaAGAc- -3' miRNA: 3'- -CGCCGCUA-------------CGCUCuau-CCAGC-UCUuu -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 25763 | 0.68 | 0.661551 |
|
Target: 5'- uUGGCGAuuugcaguugcuUGCGGGcccGGUCGAGAu- -3' miRNA: 3'- cGCCGCU------------ACGCUCuauCCAGCUCUuu -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 12445 | 0.68 | 0.650106 |
|
Target: 5'- cGCGGC-AUGUGGGAgUGGGcCGuGAAGa -3' miRNA: 3'- -CGCCGcUACGCUCU-AUCCaGCuCUUU- -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 5815 | 0.69 | 0.581451 |
|
Target: 5'- gGCGGCGAU-CGAGucggcgcGGGUCGcGAAGg -3' miRNA: 3'- -CGCCGCUAcGCUCua-----UCCAGCuCUUU- -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 1932 | 0.7 | 0.503511 |
|
Target: 5'- gGCGGCGucAUGCGuGAcggcgaucggUGGGUCGuGAAc -3' miRNA: 3'- -CGCCGC--UACGCuCU----------AUCCAGCuCUUu -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 24972 | 0.71 | 0.440512 |
|
Target: 5'- cGCGGCc--GCGAGGgacAGGUCGGGGu- -3' miRNA: 3'- -CGCCGcuaCGCUCUa--UCCAGCUCUuu -5' |
|||||||
| 28037 | 5' | -52.8 | NC_005887.1 | + | 20866 | 1.08 | 0.001459 |
|
Target: 5'- gGCGGCGAUGCGAGAUAGGUCGAGAAAc -3' miRNA: 3'- -CGCCGCUACGCUCUAUCCAGCUCUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home