miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28038 3' -56 NC_005887.1 + 16229 0.66 0.596525
Target:  5'- cACGaucgauACGcCGgCCGGCGAGCGCa- -3'
miRNA:   3'- -UGCgaau--UGC-GUgGGCUGCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 35123 0.66 0.596525
Target:  5'- uUGgUcGAUGCGCCCGACGccgacAGCGCc- -3'
miRNA:   3'- uGCgAaUUGCGUGGGCUGC-----UCGCGcu -5'
28038 3' -56 NC_005887.1 + 30474 0.66 0.596525
Target:  5'- gGCGCUgccgAACGaCGaaagaCCGcCGAGCGuCGAa -3'
miRNA:   3'- -UGCGAa---UUGC-GUg----GGCuGCUCGC-GCU- -5'
28038 3' -56 NC_005887.1 + 33645 0.66 0.596525
Target:  5'- aGCGCgcgcUGCGCUCGGCGAGgGUu- -3'
miRNA:   3'- -UGCGaauuGCGUGGGCUGCUCgCGcu -5'
28038 3' -56 NC_005887.1 + 4675 0.66 0.596525
Target:  5'- cCGCU--GCGCAgacggcgagggUCUGAUGGGCGCGc -3'
miRNA:   3'- uGCGAauUGCGU-----------GGGCUGCUCGCGCu -5'
28038 3' -56 NC_005887.1 + 10213 0.66 0.585463
Target:  5'- cGCGUcgAugccCGCGCCgGACG-GCGCGu -3'
miRNA:   3'- -UGCGaaUu---GCGUGGgCUGCuCGCGCu -5'
28038 3' -56 NC_005887.1 + 32746 0.66 0.585463
Target:  5'- gGCGCUcgcguGCGCG-CCGGCGcGCGCc- -3'
miRNA:   3'- -UGCGAau---UGCGUgGGCUGCuCGCGcu -5'
28038 3' -56 NC_005887.1 + 41658 0.66 0.585463
Target:  5'- cACGCUucgucuacguUGGCGaGCCgGACGAagguagcgagcuGCGCGAg -3'
miRNA:   3'- -UGCGA----------AUUGCgUGGgCUGCU------------CGCGCU- -5'
28038 3' -56 NC_005887.1 + 11083 0.66 0.585463
Target:  5'- gGCGaucGACGCGgCCGACGAGUacugGUGGc -3'
miRNA:   3'- -UGCgaaUUGCGUgGGCUGCUCG----CGCU- -5'
28038 3' -56 NC_005887.1 + 29608 0.66 0.585463
Target:  5'- cGCGUUgcaGCGCGgCgCGAuCGAGCGCa- -3'
miRNA:   3'- -UGCGAau-UGCGUgG-GCU-GCUCGCGcu -5'
28038 3' -56 NC_005887.1 + 27639 0.66 0.582152
Target:  5'- uGCGCgaucgcCGCGCCCGgcccgcccgccgcgACGAGCcCGAu -3'
miRNA:   3'- -UGCGaauu--GCGUGGGC--------------UGCUCGcGCU- -5'
28038 3' -56 NC_005887.1 + 40767 0.66 0.574441
Target:  5'- gGCGCgc--CGCGCgCCGcCGAGCcgGCGGu -3'
miRNA:   3'- -UGCGaauuGCGUG-GGCuGCUCG--CGCU- -5'
28038 3' -56 NC_005887.1 + 17437 0.66 0.574441
Target:  5'- cGCGCUcgucgAGCGCuacgGCCCGAaucCGAcGCGCa- -3'
miRNA:   3'- -UGCGAa----UUGCG----UGGGCU---GCU-CGCGcu -5'
28038 3' -56 NC_005887.1 + 12419 0.66 0.574441
Target:  5'- -gGC--AACGaCACCgCGGCGcGCGCGAu -3'
miRNA:   3'- ugCGaaUUGC-GUGG-GCUGCuCGCGCU- -5'
28038 3' -56 NC_005887.1 + 41805 0.66 0.574441
Target:  5'- cGCGCU----GUAUCCGGCGcGGCGCGc -3'
miRNA:   3'- -UGCGAauugCGUGGGCUGC-UCGCGCu -5'
28038 3' -56 NC_005887.1 + 5136 0.67 0.563467
Target:  5'- -gGCaUGaccGCGCuGCCCGACGucGGCGCGc -3'
miRNA:   3'- ugCGaAU---UGCG-UGGGCUGC--UCGCGCu -5'
28038 3' -56 NC_005887.1 + 18822 0.67 0.563467
Target:  5'- uACGCUgccAGCuCACCCGcGCGuucgucAGCGCGGc -3'
miRNA:   3'- -UGCGAa--UUGcGUGGGC-UGC------UCGCGCU- -5'
28038 3' -56 NC_005887.1 + 40428 0.67 0.563467
Target:  5'- cACGCaUGACGcCGCCCGGCu-GC-CGAa -3'
miRNA:   3'- -UGCGaAUUGC-GUGGGCUGcuCGcGCU- -5'
28038 3' -56 NC_005887.1 + 23656 0.67 0.55255
Target:  5'- cGCGCUgauUGUcggagauaAUCCGGCGcGCGCGAa -3'
miRNA:   3'- -UGCGAauuGCG--------UGGGCUGCuCGCGCU- -5'
28038 3' -56 NC_005887.1 + 42077 0.67 0.55255
Target:  5'- uCGacgAGCGCugUcgCGugGGGCGCGAu -3'
miRNA:   3'- uGCgaaUUGCGugG--GCugCUCGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.