Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28039 | 5' | -54.3 | NC_005887.1 | + | 1984 | 0.67 | 0.625598 |
Target: 5'- --cUCGCGCgcgaCGGCGGCAcGg--CCGCg -3' miRNA: 3'- guuAGCGUGg---GCCGUCGU-CaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 3193 | 0.7 | 0.439744 |
Target: 5'- ---cCGCGCCCGGaCAGCgAGaagggCCGCg -3' miRNA: 3'- guuaGCGUGGGCC-GUCG-UCaaa--GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 4885 | 0.73 | 0.266771 |
Target: 5'- uGAUCGCAUCCGGCGcacugcaaaccgcGCAGgcaagcgCCGCg -3' miRNA: 3'- gUUAGCGUGGGCCGU-------------CGUCaaa----GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 4936 | 0.7 | 0.410104 |
Target: 5'- ---cCGCACCUGGCGuGCAGgcagUCGCg -3' miRNA: 3'- guuaGCGUGGGCCGU-CGUCaaa-GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 7284 | 0.68 | 0.522032 |
Target: 5'- aAGUCGCGCCCgccgacgacGGCAGCGaccucgcGUaaccccaUUCCACc -3' miRNA: 3'- gUUAGCGUGGG---------CCGUCGU-------CA-------AAGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 8930 | 0.69 | 0.449893 |
Target: 5'- gGAUCGUcuGCUCGGUcGCGGUaUCUACg -3' miRNA: 3'- gUUAGCG--UGGGCCGuCGUCAaAGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 12382 | 0.7 | 0.429727 |
Target: 5'- ----aGCAUCCGcGCGGCGGUgUUCGCg -3' miRNA: 3'- guuagCGUGGGC-CGUCGUCAaAGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 13608 | 0.68 | 0.530829 |
Target: 5'- -cAUCGCugCUGGCAGCGcGgcgcgcggcggCCGCa -3' miRNA: 3'- guUAGCGugGGCCGUCGU-Caaa--------GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 14493 | 0.7 | 0.439744 |
Target: 5'- aGAUCGUGCCCGccGCGGUgcuuGGUggUCCGCu -3' miRNA: 3'- gUUAGCGUGGGC--CGUCG----UCAa-AGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 15398 | 0.72 | 0.312736 |
Target: 5'- uGAUCGCGCgCgGGCAGCGGaucgUCgACg -3' miRNA: 3'- gUUAGCGUG-GgCCGUCGUCaa--AGgUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 15490 | 0.71 | 0.35471 |
Target: 5'- cCAGUCgGUGCCCGGCGGCAacggCUACc -3' miRNA: 3'- -GUUAG-CGUGGGCCGUCGUcaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 16015 | 0.73 | 0.297033 |
Target: 5'- ---gCGCACCCGGcCAGCGccggCCACg -3' miRNA: 3'- guuaGCGUGGGCC-GUCGUcaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 17265 | 0.67 | 0.591395 |
Target: 5'- aGAUCGUGCCgGGCgagacgucgGGCGGcg-CCGCg -3' miRNA: 3'- gUUAGCGUGGgCCG---------UCGUCaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 17799 | 0.67 | 0.580054 |
Target: 5'- gCGAUCauggGCGCCCGGCcgaAGguGcggCCGCg -3' miRNA: 3'- -GUUAG----CGUGGGCCG---UCguCaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 20241 | 1.1 | 0.000623 |
Target: 5'- cCAAUCGCACCCGGCAGCAGUUUCCACa -3' miRNA: 3'- -GUUAGCGUGGGCCGUCGUCAAAGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 20540 | 0.75 | 0.203993 |
Target: 5'- ---gCGCGCCCGGCAGCg----CCGCg -3' miRNA: 3'- guuaGCGUGGGCCGUCGucaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 24482 | 0.66 | 0.671234 |
Target: 5'- cCGAUCGUgucgucgauGCCCGGCAGgaucuucgcCAGUUccUCgACg -3' miRNA: 3'- -GUUAGCG---------UGGGCCGUC---------GUCAA--AGgUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 26231 | 0.67 | 0.56876 |
Target: 5'- uGGUUGCGCgCGGC-GCAGcg-CCACc -3' miRNA: 3'- gUUAGCGUGgGCCGuCGUCaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 27908 | 0.69 | 0.491716 |
Target: 5'- gGAUCGCACCCGuuuucaagccacGCGGCGGUg--CAUu -3' miRNA: 3'- gUUAGCGUGGGC------------CGUCGUCAaagGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 29792 | 0.66 | 0.682572 |
Target: 5'- ---gCGCAUgCCGGCGGCcGUcgacgCCACg -3' miRNA: 3'- guuaGCGUG-GGCCGUCGuCAaa---GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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