Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28039 | 5' | -54.3 | NC_005887.1 | + | 14493 | 0.7 | 0.439744 |
Target: 5'- aGAUCGUGCCCGccGCGGUgcuuGGUggUCCGCu -3' miRNA: 3'- gUUAGCGUGGGC--CGUCG----UCAa-AGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 3193 | 0.7 | 0.439744 |
Target: 5'- ---cCGCGCCCGGaCAGCgAGaagggCCGCg -3' miRNA: 3'- guuaGCGUGGGCC-GUCG-UCaaa--GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 12382 | 0.7 | 0.429727 |
Target: 5'- ----aGCAUCCGcGCGGCGGUgUUCGCg -3' miRNA: 3'- guuagCGUGGGC-CGUCGUCAaAGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 33357 | 0.7 | 0.429727 |
Target: 5'- -cGUCGCGCuuGugcGCAGCAGcUUCUGCg -3' miRNA: 3'- guUAGCGUGggC---CGUCGUCaAAGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 4936 | 0.7 | 0.410104 |
Target: 5'- ---cCGCACCUGGCGuGCAGgcagUCGCg -3' miRNA: 3'- guuaGCGUGGGCCGU-CGUCaaa-GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 35334 | 0.7 | 0.400503 |
Target: 5'- ---gCGCGCCgCGGCGGCcGg--CCACg -3' miRNA: 3'- guuaGCGUGG-GCCGUCGuCaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 15490 | 0.71 | 0.35471 |
Target: 5'- cCAGUCgGUGCCCGGCGGCAacggCUACc -3' miRNA: 3'- -GUUAG-CGUGGGCCGUCGUcaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 15398 | 0.72 | 0.312736 |
Target: 5'- uGAUCGCGCgCgGGCAGCGGaucgUCgACg -3' miRNA: 3'- gUUAGCGUG-GgCCGUCGUCaa--AGgUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 16015 | 0.73 | 0.297033 |
Target: 5'- ---gCGCACCCGGcCAGCGccggCCACg -3' miRNA: 3'- guuaGCGUGGGCC-GUCGUcaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 4885 | 0.73 | 0.266771 |
Target: 5'- uGAUCGCAUCCGGCGcacugcaaaccgcGCAGgcaagcgCCGCg -3' miRNA: 3'- gUUAGCGUGGGCCGU-------------CGUCaaa----GGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 35686 | 0.74 | 0.233932 |
Target: 5'- gCGAUCgGCGgCCGGCuucGCGGUUUCCGa -3' miRNA: 3'- -GUUAG-CGUgGGCCGu--CGUCAAAGGUg -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 20540 | 0.75 | 0.203993 |
Target: 5'- ---gCGCGCCCGGCAGCg----CCGCg -3' miRNA: 3'- guuaGCGUGGGCCGUCGucaaaGGUG- -5' |
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28039 | 5' | -54.3 | NC_005887.1 | + | 20241 | 1.1 | 0.000623 |
Target: 5'- cCAAUCGCACCCGGCAGCAGUUUCCACa -3' miRNA: 3'- -GUUAGCGUGGGCCGUCGUCAAAGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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