miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2804 5' -59.8 NC_001491.2 + 99025 0.7 0.525555
Target:  5'- cGCCggCUACCaGCuGUUCGCagGCCCCCCg -3'
miRNA:   3'- -UGGaaGGUGGgUG-CAGGUG--UGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 102480 0.66 0.776544
Target:  5'- cCCUcgcagcgUCUAUCCACgGUCCcucUACUCCCCg -3'
miRNA:   3'- uGGA-------AGGUGGGUG-CAGGu--GUGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 103865 0.66 0.786396
Target:  5'- cACUgcgUCUuuCCCGCGUCCugGUCCCUg -3'
miRNA:   3'- -UGGa--AGGu-GGGUGCAGGugUGGGGGg -5'
2804 5' -59.8 NC_001491.2 + 105687 0.66 0.76746
Target:  5'- gACC-UCCAUCUugaucuuGCGUCUGguCCCCCUc -3'
miRNA:   3'- -UGGaAGGUGGG-------UGCAGGUguGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 109335 0.67 0.711841
Target:  5'- uACCUUUUACCUAUccgcgGUCCGCugCCaaagaCCu -3'
miRNA:   3'- -UGGAAGGUGGGUG-----CAGGUGugGGg----GG- -5'
2804 5' -59.8 NC_001491.2 + 109663 0.68 0.633193
Target:  5'- uGCC--CCAUUCAUG-CUACGCCCCCUc -3'
miRNA:   3'- -UGGaaGGUGGGUGCaGGUGUGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 113033 0.7 0.516055
Target:  5'- gACCccCC-CCCuuaGaCCACGCCCCCCu -3'
miRNA:   3'- -UGGaaGGuGGGug-CaGGUGUGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 113090 0.74 0.337743
Target:  5'- cCCUUCCGCUUcCGgCCACGCCCCUUc -3'
miRNA:   3'- uGGAAGGUGGGuGCaGGUGUGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 115492 0.68 0.622287
Target:  5'- cCCUggCCACCauCGCGgcCCGCugcagcgGCCCCCCg -3'
miRNA:   3'- uGGAa-GGUGG--GUGCa-GGUG-------UGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 115880 0.67 0.702147
Target:  5'- gACCgugCCAUCCACGg--GCGCCCCa- -3'
miRNA:   3'- -UGGaa-GGUGGGUGCaggUGUGGGGgg -5'
2804 5' -59.8 NC_001491.2 + 116082 0.66 0.768373
Target:  5'- cCCcUCguCCCACucCCAguCCCCCCa -3'
miRNA:   3'- uGGaAGguGGGUGcaGGUguGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 117276 0.66 0.740506
Target:  5'- uCCUggCCGCCuCGCG-CUACGCCgaggcgcaggCCCCa -3'
miRNA:   3'- uGGAa-GGUGG-GUGCaGGUGUGG----------GGGG- -5'
2804 5' -59.8 NC_001491.2 + 117391 0.67 0.731029
Target:  5'- -gCUUCuCACCC-CGUCCGgggACCCCUg -3'
miRNA:   3'- ugGAAG-GUGGGuGCAGGUg--UGGGGGg -5'
2804 5' -59.8 NC_001491.2 + 118329 0.7 0.544748
Target:  5'- uGCCgcCCAgCCgGCGUCCccgGCACCCagCCCg -3'
miRNA:   3'- -UGGaaGGU-GGgUGCAGG---UGUGGG--GGG- -5'
2804 5' -59.8 NC_001491.2 + 120243 0.67 0.72243
Target:  5'- uACCgggcaucUCCcCCCACacagcugucucaagCCACGCCCCCUc -3'
miRNA:   3'- -UGGa------AGGuGGGUGca------------GGUGUGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 120788 0.71 0.497268
Target:  5'- -aCUUCUuauccguUCCACGcCCcCACCCCCCg -3'
miRNA:   3'- ugGAAGGu------GGGUGCaGGuGUGGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 121991 0.7 0.55443
Target:  5'- gACUcgucgCCGCUCACGUCaCACuCCuCCCCa -3'
miRNA:   3'- -UGGaa---GGUGGGUGCAG-GUGuGG-GGGG- -5'
2804 5' -59.8 NC_001491.2 + 123017 0.66 0.772016
Target:  5'- cGCCgcggugUCCgugcuggucggguauAgCC-CGUCCGCGCCCgCCCc -3'
miRNA:   3'- -UGGa-----AGG---------------UgGGuGCAGGUGUGGG-GGG- -5'
2804 5' -59.8 NC_001491.2 + 123115 0.72 0.417005
Target:  5'- gGCCcggcgCCGCUCcggagcGCGUCCGCugCCUCCg -3'
miRNA:   3'- -UGGaa---GGUGGG------UGCAGGUGugGGGGG- -5'
2804 5' -59.8 NC_001491.2 + 125145 0.73 0.352686
Target:  5'- uGCCaacCCGCCCcaccuCGUCUugGCCCCCa -3'
miRNA:   3'- -UGGaa-GGUGGGu----GCAGGugUGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.