Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2804 | 5' | -59.8 | NC_001491.2 | + | 103865 | 0.66 | 0.786396 |
Target: 5'- cACUgcgUCUuuCCCGCGUCCugGUCCCUg -3' miRNA: 3'- -UGGa--AGGu-GGGUGCAGGugUGGGGGg -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 117276 | 0.66 | 0.740506 |
Target: 5'- uCCUggCCGCCuCGCG-CUACGCCgaggcgcaggCCCCa -3' miRNA: 3'- uGGAa-GGUGG-GUGCaGGUGUGG----------GGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 125312 | 0.67 | 0.731029 |
Target: 5'- cGCCUUUaCACCCACcaCCGCcuaGCCCUgCa -3' miRNA: 3'- -UGGAAG-GUGGGUGcaGGUG---UGGGGgG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 147246 | 0.68 | 0.633193 |
Target: 5'- gGCCUUCUGCggCugGgCUGCugCCCCCg -3' miRNA: 3'- -UGGAAGGUGg-GugCaGGUGugGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 109663 | 0.68 | 0.633193 |
Target: 5'- uGCC--CCAUUCAUG-CUACGCCCCCUc -3' miRNA: 3'- -UGGaaGGUGGGUGCaGGUGUGGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 141739 | 0.68 | 0.676705 |
Target: 5'- cGCCgUCCACCagcccccucauccCGUcCCugACCCCCUc -3' miRNA: 3'- -UGGaAGGUGGgu-----------GCA-GGugUGGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 80088 | 0.67 | 0.693375 |
Target: 5'- gGCCaucUCCACCCAaggaauggcggcguaGUCCAC-CCCaUCCa -3' miRNA: 3'- -UGGa--AGGUGGGUg--------------CAGGUGuGGG-GGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 115880 | 0.67 | 0.702147 |
Target: 5'- gACCgugCCAUCCACGg--GCGCCCCa- -3' miRNA: 3'- -UGGaa-GGUGGGUGCaggUGUGGGGgg -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 145883 | 0.67 | 0.702147 |
Target: 5'- cCCggUCC-CCC-CGUaUCGCACCCUCCc -3' miRNA: 3'- uGGa-AGGuGGGuGCA-GGUGUGGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 109335 | 0.67 | 0.711841 |
Target: 5'- uACCUUUUACCUAUccgcgGUCCGCugCCaaagaCCu -3' miRNA: 3'- -UGGAAGGUGGGUG-----CAGGUGugGGg----GG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 145014 | 0.67 | 0.711841 |
Target: 5'- gACCgggUCGgCCGCGUCCcCACCgCCg -3' miRNA: 3'- -UGGaa-GGUgGGUGCAGGuGUGGgGGg -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 85721 | 0.67 | 0.720511 |
Target: 5'- gGCCUgcgCCGCCaCACGUCuCugGgggugucUCCUCCg -3' miRNA: 3'- -UGGAa--GGUGG-GUGCAG-GugU-------GGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 120243 | 0.67 | 0.72243 |
Target: 5'- uACCgggcaucUCCcCCCACacagcugucucaagCCACGCCCCCUc -3' miRNA: 3'- -UGGa------AGGuGGGUGca------------GGUGUGGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 117391 | 0.67 | 0.731029 |
Target: 5'- -gCUUCuCACCC-CGUCCGgggACCCCUg -3' miRNA: 3'- ugGAAG-GUGGGuGCAGGUg--UGGGGGg -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 36767 | 0.67 | 0.731029 |
Target: 5'- aGCCUaucaCUACCaCAuCGgCCugaGCGCCCCCCg -3' miRNA: 3'- -UGGAa---GGUGG-GU-GCaGG---UGUGGGGGG- -5' |
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2804 | 5' | -59.8 | NC_001491.2 | + | 21204 | 0.66 | 0.786396 |
Target: 5'- aACCgUUCCGguguuugcgccCCCGCuGUCa--ACCCCCCc -3' miRNA: 3'- -UGG-AAGGU-----------GGGUG-CAGgugUGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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