miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28040 3' -59.3 NC_005887.1 + 38226 0.67 0.369402
Target:  5'- aGCcuUGCGCGUgGCCGggauggucgagCGCUcGAUCGa -3'
miRNA:   3'- aCG--ACGCGCGgUGGCa----------GCGA-CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 26911 0.67 0.360792
Target:  5'- aGCUGCGC-CCGa-GUCGCUGGcCGc -3'
miRNA:   3'- aCGACGCGcGGUggCAGCGACUaGCa -5'
28040 3' -59.3 NC_005887.1 + 26461 0.67 0.360792
Target:  5'- aGCUGCGCGUcgagcgCACCGagcUGCUGGUgCGc -3'
miRNA:   3'- aCGACGCGCG------GUGGCa--GCGACUA-GCa -5'
28040 3' -59.3 NC_005887.1 + 32752 0.67 0.34731
Target:  5'- cGCgUGCGCGCCggcgcgcgccaugcaGCCGgcucgugCGCagGAUCGg -3'
miRNA:   3'- aCG-ACGCGCGG---------------UGGCa------GCGa-CUAGCa -5'
28040 3' -59.3 NC_005887.1 + 36170 0.67 0.343996
Target:  5'- cGCgGCGCGUCACCGU-GCcGAcCGg -3'
miRNA:   3'- aCGaCGCGCGGUGGCAgCGaCUaGCa -5'
28040 3' -59.3 NC_005887.1 + 25669 0.67 0.343996
Target:  5'- cGCaGCGCGUCGCCaUCGUcGGUCa- -3'
miRNA:   3'- aCGaCGCGCGGUGGcAGCGaCUAGca -5'
28040 3' -59.3 NC_005887.1 + 812 0.67 0.335812
Target:  5'- cGCgUGCGCGCCgagcGCC-UCGCgGAUCu- -3'
miRNA:   3'- aCG-ACGCGCGG----UGGcAGCGaCUAGca -5'
28040 3' -59.3 NC_005887.1 + 22114 0.68 0.32777
Target:  5'- cUGCUGCcggGUGCgAUUGgcUCGCUGAUCGc -3'
miRNA:   3'- -ACGACG---CGCGgUGGC--AGCGACUAGCa -5'
28040 3' -59.3 NC_005887.1 + 14027 0.68 0.312117
Target:  5'- cGCcgGCGCGCCGCCGgCGCagccUGAgaCGa -3'
miRNA:   3'- aCGa-CGCGCGGUGGCaGCG----ACUa-GCa -5'
28040 3' -59.3 NC_005887.1 + 28193 0.68 0.304506
Target:  5'- gGCUGUGCGCCGCaucagCGCcGcgCGUc -3'
miRNA:   3'- aCGACGCGCGGUGgca--GCGaCuaGCA- -5'
28040 3' -59.3 NC_005887.1 + 29698 0.68 0.303753
Target:  5'- aGCUGCacGCGCagccacuCGCCGUCGCgucgcagGAUCa- -3'
miRNA:   3'- aCGACG--CGCG-------GUGGCAGCGa------CUAGca -5'
28040 3' -59.3 NC_005887.1 + 30980 0.68 0.297039
Target:  5'- gGCUGCGCugaCGcCCG-CGCUGAUCa- -3'
miRNA:   3'- aCGACGCGcg-GU-GGCaGCGACUAGca -5'
28040 3' -59.3 NC_005887.1 + 36943 0.68 0.297039
Target:  5'- cGCUGCgGCGCCgcccgccgguucACCGgucgCGCUGGcuUCGc -3'
miRNA:   3'- aCGACG-CGCGG------------UGGCa---GCGACU--AGCa -5'
28040 3' -59.3 NC_005887.1 + 28924 0.68 0.297039
Target:  5'- aGCgGUGCGCCGCuCGUCGCaGcagCGg -3'
miRNA:   3'- aCGaCGCGCGGUG-GCAGCGaCua-GCa -5'
28040 3' -59.3 NC_005887.1 + 38417 0.68 0.289714
Target:  5'- -uCUGCGCGCCGCgGaUGUUGGUCu- -3'
miRNA:   3'- acGACGCGCGGUGgCaGCGACUAGca -5'
28040 3' -59.3 NC_005887.1 + 6038 0.69 0.282531
Target:  5'- gUGCgcgGCGuCGaCCGCCG-CGCaGAUCGg -3'
miRNA:   3'- -ACGa--CGC-GC-GGUGGCaGCGaCUAGCa -5'
28040 3' -59.3 NC_005887.1 + 26745 0.69 0.275491
Target:  5'- cUGCUGCGCGaCGcCCGUgCGCUGcGUCu- -3'
miRNA:   3'- -ACGACGCGCgGU-GGCA-GCGAC-UAGca -5'
28040 3' -59.3 NC_005887.1 + 14125 0.69 0.275491
Target:  5'- aGCUGCGCGCgcugcucaaaacCGCCGagacgcgcggCGCUGAUgCGg -3'
miRNA:   3'- aCGACGCGCG------------GUGGCa---------GCGACUA-GCa -5'
28040 3' -59.3 NC_005887.1 + 28553 0.69 0.268591
Target:  5'- gGCUGCugaauuuguagGCGUCGCCGccCGCUGcgCGg -3'
miRNA:   3'- aCGACG-----------CGCGGUGGCa-GCGACuaGCa -5'
28040 3' -59.3 NC_005887.1 + 27250 0.69 0.268591
Target:  5'- cUGCaucGCGCGCCgGCCcgcGUCGCcaaUGAUCGg -3'
miRNA:   3'- -ACGa--CGCGCGG-UGG---CAGCG---ACUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.