Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28040 | 5' | -53.6 | NC_005887.1 | + | 32819 | 0.74 | 0.281871 |
Target: 5'- -cACGAaCAGCGGGCCGaCGUGAUGg -3' miRNA: 3'- gcUGCUaGUCGCCCGGUgGCAUUAUa -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 5152 | 0.66 | 0.747172 |
Target: 5'- cCGACG-UCGGCGcGCCGCUGaugcUGAUGg -3' miRNA: 3'- -GCUGCuAGUCGCcCGGUGGC----AUUAUa -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 1493 | 0.66 | 0.747172 |
Target: 5'- gCGGCGcUCGcGCGGcGCgGCCGUGcgGa -3' miRNA: 3'- -GCUGCuAGU-CGCC-CGgUGGCAUuaUa -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 9037 | 0.66 | 0.735263 |
Target: 5'- uGACGuuuGUCGGCGGcccguucGCgGCCGUGAa-- -3' miRNA: 3'- gCUGC---UAGUCGCC-------CGgUGGCAUUaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 24944 | 0.66 | 0.725418 |
Target: 5'- gCGACGcgugCGcGCGGGCCGCCu------ -3' miRNA: 3'- -GCUGCua--GU-CGCCCGGUGGcauuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 22786 | 0.66 | 0.714386 |
Target: 5'- uCGACGc-CGGCGcGGCCGCUGUu---- -3' miRNA: 3'- -GCUGCuaGUCGC-CCGGUGGCAuuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 13188 | 0.67 | 0.65817 |
Target: 5'- -aGCGGUCgAGCaGGCCGCCGg----- -3' miRNA: 3'- gcUGCUAG-UCGcCCGGUGGCauuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 12660 | 0.68 | 0.612655 |
Target: 5'- aGugGGUCGGCGauuuGCCGCCGa----- -3' miRNA: 3'- gCugCUAGUCGCc---CGGUGGCauuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 34688 | 0.69 | 0.534052 |
Target: 5'- uGuCGAgcagCAGCGGGCgGCCGUc---- -3' miRNA: 3'- gCuGCUa---GUCGCCCGgUGGCAuuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 298 | 0.7 | 0.480134 |
Target: 5'- uGGCguGAUCAGCGaGGCCGCgGUGc--- -3' miRNA: 3'- gCUG--CUAGUCGC-CCGGUGgCAUuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 32293 | 0.7 | 0.459313 |
Target: 5'- gGGCGAUCGuCGGGCCAgCCGg----- -3' miRNA: 3'- gCUGCUAGUcGCCCGGU-GGCauuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 2341 | 0.7 | 0.459313 |
Target: 5'- uGGCGAUcCGGCGGGCgACCa------ -3' miRNA: 3'- gCUGCUA-GUCGCCCGgUGGcauuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 1948 | 0.71 | 0.438983 |
Target: 5'- aCGGCGAUCGGUGGGUCGugaacCCGgcGg-- -3' miRNA: 3'- -GCUGCUAGUCGCCCGGU-----GGCauUaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 18137 | 0.72 | 0.354333 |
Target: 5'- cCGGCGAagcGCGGGCCGCCGa----- -3' miRNA: 3'- -GCUGCUaguCGCCCGGUGGCauuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 17796 | 0.7 | 0.484354 |
Target: 5'- aCGGCGAUCaugGGCGcccggccgaaggugcGGCCGCgCGUGAUGc -3' miRNA: 3'- -GCUGCUAG---UCGC---------------CCGGUG-GCAUUAUa -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 32310 | 0.68 | 0.609244 |
Target: 5'- gCGACauGAUgccgcuguucgugcCAGCGcGGCCGCgCGUGAUGUg -3' miRNA: 3'- -GCUG--CUA--------------GUCGC-CCGGUG-GCAUUAUA- -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 27705 | 0.68 | 0.612655 |
Target: 5'- gCGACGggCAGCaccgcgccGGCUGCCGUGAg-- -3' miRNA: 3'- -GCUGCuaGUCGc-------CCGGUGGCAUUaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 41483 | 0.66 | 0.714386 |
Target: 5'- cCGGCGG-C-GCGGGCCACgCGUc---- -3' miRNA: 3'- -GCUGCUaGuCGCCCGGUG-GCAuuaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 34938 | 0.66 | 0.725418 |
Target: 5'- aGGCGG-CGGCGGGUgcgACCGUGGc-- -3' miRNA: 3'- gCUGCUaGUCGCCCGg--UGGCAUUaua -5' |
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28040 | 5' | -53.6 | NC_005887.1 | + | 20130 | 1.07 | 0.001516 |
Target: 5'- gCGACGAUCAGCGGGCCACCGUAAUAUg -3' miRNA: 3'- -GCUGCUAGUCGCCCGGUGGCAUUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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