Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28041 | 3' | -46.5 | NC_005887.1 | + | 29212 | 0.69 | 0.937715 |
Target: 5'- gCGACGAgacgAGGCCCGGcacgcUCGAGGu-- -3' miRNA: 3'- -GCUGCU----UUCGGGCUaau--AGCUCUuug -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 38515 | 0.69 | 0.937715 |
Target: 5'- cCGACGuAGAagcGCCCGAUUGcgaaCGGGAAGg -3' miRNA: 3'- -GCUGC-UUU---CGGGCUAAUa---GCUCUUUg -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 15613 | 0.68 | 0.953024 |
Target: 5'- gGACGAGccgaucgugcGCCCGGUcuaUGUCGAGcuGCc -3' miRNA: 3'- gCUGCUUu---------CGGGCUA---AUAGCUCuuUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 5072 | 0.68 | 0.961685 |
Target: 5'- gCGACGAcuGCaCCGAcuccCGAGAAAUc -3' miRNA: 3'- -GCUGCUuuCG-GGCUaauaGCUCUUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 11928 | 0.68 | 0.965571 |
Target: 5'- cCGACGucGGCCUGAUgg-UGGGcGAACu -3' miRNA: 3'- -GCUGCuuUCGGGCUAauaGCUC-UUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 25764 | 0.67 | 0.970533 |
Target: 5'- uGGCGAuuugcaguugcuugcGGGCCCGG---UCGAGAucGGCu -3' miRNA: 3'- gCUGCU---------------UUCGGGCUaauAGCUCU--UUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 3705 | 0.67 | 0.978351 |
Target: 5'- uCGACGAGaacgacGGCCCGAUguuguucgCGuuGAACc -3' miRNA: 3'- -GCUGCUU------UCGGGCUAaua-----GCucUUUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 35807 | 0.67 | 0.978351 |
Target: 5'- gCGGCGAcAGCCCcGUgaauUCGgcGGggGCg -3' miRNA: 3'- -GCUGCUuUCGGGcUAau--AGC--UCuuUG- -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 19184 | 0.66 | 0.985134 |
Target: 5'- gCGACGAgaaaggcAAGCCacacaCGGggGUCGAGGAu- -3' miRNA: 3'- -GCUGCU-------UUCGG-----GCUaaUAGCUCUUug -5' |
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28041 | 3' | -46.5 | NC_005887.1 | + | 19854 | 1.11 | 0.005302 |
Target: 5'- cCGACGAAAGCCCGAUUAUCGAGAAACc -3' miRNA: 3'- -GCUGCUUUCGGGCUAAUAGCUCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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