miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28042 3' -53 NC_005887.1 + 16157 0.66 0.785779
Target:  5'- cGGCGcgCCGaguGCGCGaGCGAUcgagGCGAa -3'
miRNA:   3'- -UCGCuaGGUg--UGCGUgUGCUAa---CGCU- -5'
28042 3' -53 NC_005887.1 + 14710 0.66 0.785779
Target:  5'- gGGCGggCCGgGCGCG-GCGAUcGCGc -3'
miRNA:   3'- -UCGCuaGGUgUGCGUgUGCUAaCGCu -5'
28042 3' -53 NC_005887.1 + 12909 0.66 0.785779
Target:  5'- cGGCGAgCCAgCACGCcgguuuCGCGAgcGCGu -3'
miRNA:   3'- -UCGCUaGGU-GUGCGu-----GUGCUaaCGCu -5'
28042 3' -53 NC_005887.1 + 26807 0.66 0.784755
Target:  5'- gAGCGccuucugaauuucAUCCuGCGCGUGCGCGA--GCGGg -3'
miRNA:   3'- -UCGC-------------UAGG-UGUGCGUGUGCUaaCGCU- -5'
28042 3' -53 NC_005887.1 + 41490 0.66 0.775465
Target:  5'- cGCGggCCACGCGUcCACGg--GCa- -3'
miRNA:   3'- uCGCuaGGUGUGCGuGUGCuaaCGcu -5'
28042 3' -53 NC_005887.1 + 27957 0.66 0.775465
Target:  5'- cGGacaGGUCgUACGCGCGCGCGccgagcgGCGAc -3'
miRNA:   3'- -UCg--CUAG-GUGUGCGUGUGCuaa----CGCU- -5'
28042 3' -53 NC_005887.1 + 2940 0.66 0.775465
Target:  5'- cGCGAgaugCCGaACGCGgucgcgacCACGGUUGCGc -3'
miRNA:   3'- uCGCUa---GGUgUGCGU--------GUGCUAACGCu -5'
28042 3' -53 NC_005887.1 + 41532 0.66 0.775465
Target:  5'- cGCGAUCgCGCGaGCAUggcuguugaucGCGAUcGCGAg -3'
miRNA:   3'- uCGCUAG-GUGUgCGUG-----------UGCUAaCGCU- -5'
28042 3' -53 NC_005887.1 + 12701 0.66 0.764991
Target:  5'- cAG-GGUCaCGCGCGCACGCuGGUcGCGc -3'
miRNA:   3'- -UCgCUAG-GUGUGCGUGUG-CUAaCGCu -5'
28042 3' -53 NC_005887.1 + 37462 0.66 0.764991
Target:  5'- cGCGGUuuGCAgUGCGC-CGGaUGCGAu -3'
miRNA:   3'- uCGCUAggUGU-GCGUGuGCUaACGCU- -5'
28042 3' -53 NC_005887.1 + 40150 0.66 0.764991
Target:  5'- uGCGcgCCGCGCuCGC-CGcgUGUGAg -3'
miRNA:   3'- uCGCuaGGUGUGcGUGuGCuaACGCU- -5'
28042 3' -53 NC_005887.1 + 13529 0.66 0.764991
Target:  5'- uGCGcgCCACGauCGCGaauGCGAUcgGCGAu -3'
miRNA:   3'- uCGCuaGGUGU--GCGUg--UGCUAa-CGCU- -5'
28042 3' -53 NC_005887.1 + 14515 0.66 0.754371
Target:  5'- uGGUGGUCCGCuuGCagGCGCGGccgucgGCGGc -3'
miRNA:   3'- -UCGCUAGGUGugCG--UGUGCUaa----CGCU- -5'
28042 3' -53 NC_005887.1 + 8372 0.66 0.754371
Target:  5'- uGCGAaagCCugACGCagaGCGCGAcgaaGCGAc -3'
miRNA:   3'- uCGCUa--GGugUGCG---UGUGCUaa--CGCU- -5'
28042 3' -53 NC_005887.1 + 389 0.66 0.754371
Target:  5'- gAGCGcgCCGCGCaCGCACcac-GCGAg -3'
miRNA:   3'- -UCGCuaGGUGUGcGUGUGcuaaCGCU- -5'
28042 3' -53 NC_005887.1 + 24394 0.66 0.743617
Target:  5'- cGGCGAgCC-CGCGCAuCAUG--UGCGAc -3'
miRNA:   3'- -UCGCUaGGuGUGCGU-GUGCuaACGCU- -5'
28042 3' -53 NC_005887.1 + 27848 0.66 0.743617
Target:  5'- aAGCGGaCCACcaagcaccgcgGCGgGCACGAUcugcGCGAg -3'
miRNA:   3'- -UCGCUaGGUG-----------UGCgUGUGCUAa---CGCU- -5'
28042 3' -53 NC_005887.1 + 40517 0.66 0.743617
Target:  5'- cGGC-AUCCAcCACGCggcGCGCGGcaGCGAc -3'
miRNA:   3'- -UCGcUAGGU-GUGCG---UGUGCUaaCGCU- -5'
28042 3' -53 NC_005887.1 + 32801 0.66 0.743617
Target:  5'- cGCGcgCCGCuucACGgGCACGAacaGCGGg -3'
miRNA:   3'- uCGCuaGGUG---UGCgUGUGCUaa-CGCU- -5'
28042 3' -53 NC_005887.1 + 813 0.66 0.743617
Target:  5'- cGCGAUcaacagCCAUGCuCGCGCGAUcGCGGc -3'
miRNA:   3'- uCGCUA------GGUGUGcGUGUGCUAaCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.