Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28042 | 5' | -53.8 | NC_005887.1 | + | 2028 | 0.66 | 0.715141 |
Target: 5'- -uUCGGCGgcgaacgUCUUcGGCAUGUCG-UCGa -3' miRNA: 3'- guAGUCGC-------AGAGcCCGUACAGCuAGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 5933 | 0.7 | 0.483959 |
Target: 5'- -uUCGGUGUgUCGGGCGaGgUGAUCGa -3' miRNA: 3'- guAGUCGCAgAGCCCGUaCaGCUAGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 7593 | 0.68 | 0.638065 |
Target: 5'- gCAUC-GCGUaagCGGcGCcgGUUGAUCGa -3' miRNA: 3'- -GUAGuCGCAga-GCC-CGuaCAGCUAGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 14538 | 0.7 | 0.483959 |
Target: 5'- cCGUCGGCGgcgCgUCGaucGGCAUGUCGcgCGc -3' miRNA: 3'- -GUAGUCGCa--G-AGC---CCGUACAGCuaGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 19791 | 1.08 | 0.001309 |
Target: 5'- gCAUCAGCGUCUCGGGCAUGUCGAUCGc -3' miRNA: 3'- -GUAGUCGCAGAGCCCGUACAGCUAGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 28041 | 0.67 | 0.680784 |
Target: 5'- uGUCGGCGUCggccugcgcuugCGGGUucagcgugagcGUGUCcgGAUCGa -3' miRNA: 3'- gUAGUCGCAGa-----------GCCCG-----------UACAG--CUAGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 28789 | 0.67 | 0.694158 |
Target: 5'- uCGUCGGCcugCUCGGGCGgcagcgcaucGcCGAUCGc -3' miRNA: 3'- -GUAGUCGca-GAGCCCGUa---------CaGCUAGC- -5' |
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28042 | 5' | -53.8 | NC_005887.1 | + | 37199 | 0.69 | 0.569544 |
Target: 5'- gCAUCAGCGgcgCgccgacgUCGGGCAgcgCGGUCa -3' miRNA: 3'- -GUAGUCGCa--G-------AGCCCGUacaGCUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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