Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28043 | 3' | -56.1 | NC_005887.1 | + | 777 | 0.68 | 0.476456 |
Target: 5'- cUGGCCGacaggaacgucUCGgcgcuggCUGACUUCGCGuGCGc -3' miRNA: 3'- cAUCGGC-----------AGCa------GGCUGAAGCGCuCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 3337 | 0.66 | 0.594592 |
Target: 5'- -aAGCCGcCGU-CGACUgCGCGguGGCAc -3' miRNA: 3'- caUCGGCaGCAgGCUGAaGCGC--UCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 9828 | 0.66 | 0.616807 |
Target: 5'- cGUGGCCGgauaugcCGUUCGAgcagauggagcUUUUGUGAGCGg -3' miRNA: 3'- -CAUCGGCa------GCAGGCU-----------GAAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 12913 | 0.66 | 0.616807 |
Target: 5'- -gAGCCagcaCG-CCGGUUUCGCGAGCGc -3' miRNA: 3'- caUCGGca--GCaGGCUGAAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 13638 | 0.69 | 0.417044 |
Target: 5'- --cGCgUGUCGUUCGACgacuacgacgauUUCGCGGGCGu -3' miRNA: 3'- cauCG-GCAGCAGGCUG------------AAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 13858 | 0.7 | 0.345294 |
Target: 5'- ---cCCGUCG-CUGACUUCGUGaAGCAg -3' miRNA: 3'- caucGGCAGCaGGCUGAAGCGC-UCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 13906 | 0.68 | 0.476456 |
Target: 5'- -aAGCCGaCGaagggUCaGCUUCGCGAGCAc -3' miRNA: 3'- caUCGGCaGCa----GGcUGAAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 17337 | 0.67 | 0.507697 |
Target: 5'- cUGGCCGgCGgCCGcCggCGCGAGCu -3' miRNA: 3'- cAUCGGCaGCaGGCuGaaGCGCUCGu -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 17793 | 0.68 | 0.486767 |
Target: 5'- cGUGGCUGUCGUCgcaggGGCUgaUCGcCGAGUc -3' miRNA: 3'- -CAUCGGCAGCAGg----CUGA--AGC-GCUCGu -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 18549 | 0.78 | 0.118549 |
Target: 5'- gGUGGgCGgCGgcgCCGGCUUCGCGGGCGa -3' miRNA: 3'- -CAUCgGCaGCa--GGCUGAAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 19155 | 0.7 | 0.389082 |
Target: 5'- aGUAGCCGcCc-CCGGCcgugaUCGCGAGCGc -3' miRNA: 3'- -CAUCGGCaGcaGGCUGa----AGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 19604 | 1.08 | 0.000691 |
Target: 5'- uGUAGCCGUCGUCCGACUUCGCGAGCAg -3' miRNA: 3'- -CAUCGGCAGCAGGCUGAAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 20642 | 0.66 | 0.605688 |
Target: 5'- cGUGGCCGgacUGUCUG---UUGCGGGCAc -3' miRNA: 3'- -CAUCGGCa--GCAGGCugaAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 22994 | 0.69 | 0.426634 |
Target: 5'- --cGCCGcacgCGUCUG-CUgCGCGAGCAu -3' miRNA: 3'- cauCGGCa---GCAGGCuGAaGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 23951 | 0.66 | 0.616807 |
Target: 5'- cGgcGCCGcggCGUaggccaUCGGgUUCGCGAGCGc -3' miRNA: 3'- -CauCGGCa--GCA------GGCUgAAGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 24319 | 0.72 | 0.268698 |
Target: 5'- -cGGCCGUCaGUCCGGCg-CGCGuaAGCGc -3' miRNA: 3'- caUCGGCAG-CAGGCUGaaGCGC--UCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 24421 | 0.67 | 0.539773 |
Target: 5'- -gAGCuCGuUCGUgCGcACgcaggUCGCGAGCAg -3' miRNA: 3'- caUCG-GC-AGCAgGC-UGa----AGCGCUCGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 25094 | 0.69 | 0.407587 |
Target: 5'- --cGCCGcCGUCgGAUUUCGCGAcCGg -3' miRNA: 3'- cauCGGCaGCAGgCUGAAGCGCUcGU- -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 26572 | 0.72 | 0.259813 |
Target: 5'- --uGCCGUCGUCCuccugcuuguagacGGCgccgUUCGCGAGCu -3' miRNA: 3'- cauCGGCAGCAGG--------------CUG----AAGCGCUCGu -5' |
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28043 | 3' | -56.1 | NC_005887.1 | + | 26705 | 0.71 | 0.328797 |
Target: 5'- -cAGCCGUCG-CgCGGC--CGCGGGCAg -3' miRNA: 3'- caUCGGCAGCaG-GCUGaaGCGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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